PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.4RJ0E

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 355aa MW: 40223.6 Da PI: 9.7943

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.4RJ0E	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.8	4.4e-53	8	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdeel+ +yL+kkv++ +l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ Aradu.4RJ0E 8 LPPGFRFHPTDEELILHYLRKKVASIPLPV-SIIAEVDIYKLDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVVSpaa 104 79**************************.89***********988899***********************************99888 PP NAM 96 .......kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kk Lvfykgr pkg+kt+W+mheyrl Aradu.4RJ0E 105 tvtrrvgQESSVGVKKALVFYKGRPPKGVKTNWIMHEYRL 144 88887776677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-64	5	171	IPR003441	NAC domain
PROSITE profile	PS51005	61.295	8	171	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	9	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MGSPESNLPP GFRFHPTDEE LILHYLRKKV ASIPLPVSII AEVDIYKLDP WELPAKAAFG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVV SPAATVTRRV GQESSVGVKK 120 ALVFYKGRPP KGVKTNWIMH EYRLVDNNRP IKLKDTSMRL DDWVLCRIYK KSKFSVSSPE 180 ESPSSEVQAA EENGLFKNTI LRSPIPTPSP SPPPPLPQPL LSQKSVSFSN LLDAMDYSML 240 STILSENNNN STLDQQQYSQ INTNQLNHSS NMENTSNSNM MVMRSKRQIE EETTTVLHPS 300 KKFHHQLMGS SSCSFPNNIN NTNTAQYENP QWNYLVKQSF LNQHLLLAPH LRFQG

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MGSPESNLPP GFRFHPTDEE LILHYLRKKV ASIPLPVSII AEVDIYKLDP WELPAKAAFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVV SPAATVTRRV GQESSVGVKK  120
ALVFYKGRPP KGVKTNWIMH EYRLVDNNRP IKLKDTSMRL DDWVLCRIYK KSKFSVSSPE  180
ESPSSEVQAA EENGLFKNTI LRSPIPTPSP SPPPPLPQPL LSQKSVSFSN LLDAMDYSML  240
STILSENNNN STLDQQQYSQ INTNQLNHSS NMENTSNSNM MVMRSKRQIE EETTTVLHPS  300
KKFHHQLMGS SSCSFPNNIN NTNTAQYENP QWNYLVKQSF LNQHLLLAPH LRFQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-72	7	171	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-72	7	171	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-72	7	171	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-72	7	171	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-72	7	171	19	168	NAC domain-containing protein 19
3swm_B	1e-72	7	171	19	168	NAC domain-containing protein 19
3swm_C	1e-72	7	171	19	168	NAC domain-containing protein 19
3swm_D	1e-72	7	171	19	168	NAC domain-containing protein 19
3swp_A	1e-72	7	171	19	168	NAC domain-containing protein 19
3swp_B	1e-72	7	171	19	168	NAC domain-containing protein 19
3swp_C	1e-72	7	171	19	168	NAC domain-containing protein 19
3swp_D	1e-72	7	171	19	168	NAC domain-containing protein 19
4dul_A	1e-72	7	171	16	165	NAC domain-containing protein 19
4dul_B	1e-72	7	171	16	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00333	DAP	Transfer from AT3G04070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.4RJ0E

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF711830	2e-90	KF711830.1 Ammopiptanthus mongolicus transcriptional factor NAC11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015971067.1	0.0	NAC transcription factor 29
Swissprot	Q84TD6	1e-103	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A445CT32	0.0	A0A445CT32_ARAHY; Uncharacterized protein
STRING	GLYMA16G04740.1	1e-160	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6621	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	5e-96	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]