PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.47JQU

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 321aa MW: 36331 Da PI: 9.2003

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.47JQU	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.8	1.4e-55	12	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL +kv ++++++ ++i+evd++++ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++ Aradu.47JQU 12 LPPGFRFHPTDEELISHYLYNKVIDTNFSA-RAIAEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKS 107 79************************99.89***********888999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfykgrapkgek+dWvmhe+rl Aradu.47JQU 108 LVGMKKTLVFYKGRAPKGEKSDWVMHEFRL 137 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-64	8	162	IPR003441	NAC domain
PROSITE profile	PS51005	59.243	12	162	IPR003441	NAC domain
Pfam	PF02365	1.5E-28	13	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MENICSEVEM DLPPGFRFHP TDEELISHYL YNKVIDTNFS ARAIAEVDLN RSEPWDLPWK 60 AKMGEKEWYF FCVRDRKYPT GLRTNRATEA GYWKATGKDK EIYRGKSLVG MKKTLVFYKG 120 RAPKGEKSDW VMHEFRLHGK FNPHNLPKSA KNEWVICRVF QKSSAAKKIH LTGIMRLDSS 180 VFLPPLADSS SSPSNTATTA PYVPCFSNPI IHNQVGIFDP FSNTPFGADS FYSSQGMPMQ 240 HAQPPSSTYS ASGYTTHDHS ILRALLQNNS SNLRSGFKPA EREMSHHQTS LVDANNNNNG 300 ITSVVAPQDL SSLWNYQVQI K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-56	8	168	13	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-56	8	168	13	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-56	8	168	13	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-56	8	168	13	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-56	8	168	16	174	NAC domain-containing protein 19
3swm_B	6e-56	8	168	16	174	NAC domain-containing protein 19
3swm_C	6e-56	8	168	16	174	NAC domain-containing protein 19
3swm_D	6e-56	8	168	16	174	NAC domain-containing protein 19
3swp_A	6e-56	8	168	16	174	NAC domain-containing protein 19
3swp_B	6e-56	8	168	16	174	NAC domain-containing protein 19
3swp_C	6e-56	8	168	16	174	NAC domain-containing protein 19
3swp_D	6e-56	8	168	16	174	NAC domain-containing protein 19
4dul_A	6e-56	8	168	13	171	NAC domain-containing protein 19
4dul_B	6e-56	8	168	13	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.47JQU

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015937929.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-123	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A445C2C6	0.0	A0A445C2C6_ARAHY; Uncharacterized protein
STRING	GLYMA05G00930.2	1e-144	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-120	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]