PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.42K79
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family AP2
Protein Properties Length: 529aa    MW: 58302 Da    PI: 7.3124
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.42K79genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-17151200155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Aradu.42K79 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 200
                  78*******************......55************************997 PP
2AP2414.7e-13243293155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Aradu.42K79 243 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 293
                  89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-9151200IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-16151209IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-17152209IPR001471AP2/ERF domain
SMARTSM003805.9E-32152214IPR001471AP2/ERF domain
CDDcd000181.83E-11152210No hitNo description
PROSITE profilePS5103217.596152208IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-17243302IPR016177DNA-binding domain
PfamPF008471.4E-8243293IPR001471AP2/ERF domain
CDDcd000187.82E-26243303No hitNo description
Gene3DG3DSA:3.30.730.101.2E-15244301IPR001471AP2/ERF domain
SMARTSM003802.5E-32244307IPR001471AP2/ERF domain
PROSITE profilePS5103215.527244301IPR001471AP2/ERF domain
PRINTSPR003676.0E-6245256IPR001471AP2/ERF domain
PRINTSPR003676.0E-6283303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MFDLNLNADC DDSTQNGDSE VVMLCEKLPE GSWNQMTEST GTSNSSVVNA DGSSNNDDSS  60
CSTRVTDNAL TFNFGILKAD DNGVVTKELF PVNGGANFVD SVNWQKSKFQ GTNGSIDLSF  120
NRQGVVDGEV KVVQVQQPAK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG  180
FDTAHAAARA YDRAAIKFRG VEADINFNLS DYEDDLKQTK NLSKEEFVHI LRRQSTGFSR  240
GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA ARAYDKAAIK CNGREAVTNF  300
EPSTYEGEMK SPAINEGGSP NLELNLGIAT PGHGLKENRG QLQFPWVPYS MHAGRTMVCC  360
IILLILHIFV LPSDHNMSGS LRLQVETNVN SVIGNPSSER LVATEEHPSR WNGVNPSFFP  420
NQVQTLQHSA SIEIELSSER ADRISIDHSK GLPGWPWQMH NQITATPVPP FSVAASSGFS  480
ISATFPSNAI FPAKSMNSTP QSLCFPSSAA PISTATQYYY QAKPRQAPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.42K79
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310860.0KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952337.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
RefseqXP_025685805.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-104RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A445E4F70.0A0A445E4F7_ARAHY; Uncharacterized protein
STRINGGLYMA12G07800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-106related to AP2.7