PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.39V24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ARF | ||||||||
Protein Properties | Length: 546aa MW: 60397.1 Da PI: 6.4665 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.2 | 3.5e-19 | 124 | 186 | 35 | 99 |
EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF ++s+++l+v+++r+ Aradu.39V24 124 VLSVTDVHGATWDFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFL--KNSQGSLFVGIRRT 186 58899********************************************..779********995 PP | |||||||
2 | Auxin_resp | 99.9 | 3.6e-33 | 232 | 315 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ +++FevvY+Pra++s+Fvvk+e ve+a+k +++GmR+kma+eted+s+ ++ +Gtv++ s d+ W++S+Wr+L+ Aradu.39V24 232 AAELAARTMPFEVVYYPRAGWSDFVVKAEAVEAAMKAGWCPGMRVKMAVETEDASRMTWfQGTVSSASVPDNGPWRGSPWRMLQ 315 6889999***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.815 | 92 | 187 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.6E-8 | 92 | 187 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-22 | 114 | 187 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-17 | 115 | 185 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.63E-13 | 123 | 185 | No hit | No description |
Pfam | PF02362 | 2.5E-16 | 124 | 185 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.4E-30 | 232 | 315 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MRPSQPRRLP PKAASLDPKI WRACAGASVH IPAVHSRVYY FPQGHLEQAF PPSLHNNHHN 60 HHLNPLIRTL PFVLCRVSSV QFLADPLSDE VFAKLLLSPI AADDRSSSTS EDRLDFNADP 120 PVQVLSVTDV HGATWDFRHI YRGTPRRHLL TTGWSKFVNH KKLVAGDSVV FLKNSQGSLF 180 VGIRRTLRFS AVLKEDRDPW LEEEEEEDNS SDPPVFTRDG RGKVTLKAVA EAAELAARTM 240 PFEVVYYPRA GWSDFVVKAE AVEAAMKAGW CPGMRVKMAV ETEDASRMTW FQGTVSSASV 300 PDNGPWRGSP WRMLQVTWDE PEVLQNAKRI SPWQVELIST TPTLHTVFPP TKKFRAGALS 360 DLEGDPYFPI AGFTNSTMEH LSQTLLGYNT FPAGMQGARH DLFSPSSFSN FLNDNSHLHM 420 GSSFFGKTTE PMLSTVSTEL NIGNCQSGDL SPDSPSSLRS FGPEFTGTNN SNVPKIGSGS 480 FLLFGKIIKP VEVELHDAGC IADDGCKSST ETECIDKPVG HSLTYSTLLR LDVESQQPSQ 540 VEACYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 2e-52 | 15 | 340 | 18 | 357 | Auxin response factor 1 |
4ldw_A | 2e-52 | 15 | 340 | 18 | 357 | Auxin response factor 1 |
4ldw_B | 2e-52 | 15 | 340 | 18 | 357 | Auxin response factor 1 |
4ldx_A | 2e-52 | 15 | 340 | 18 | 357 | Auxin response factor 1 |
4ldx_B | 2e-52 | 15 | 340 | 18 | 357 | Auxin response factor 1 |
4ldy_A | 2e-52 | 15 | 336 | 18 | 353 | Auxin response factor 1 |
4ldy_B | 2e-52 | 15 | 336 | 18 | 353 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.39V24 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 5e-43 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020988220.1 | 0.0 | auxin response factor 17 | ||||
Swissprot | Q84WU6 | 1e-146 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A444X3M6 | 0.0 | A0A444X3M6_ARAHY; Auxin response factor | ||||
STRING | XP_007141116.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4030 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-124 | auxin response factor 17 |