PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.22647 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 274aa MW: 31633.7 Da PI: 6.4259 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.2 | 5.2e-56 | 12 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdee++++yL++kv ++++++ ++i evd++k+ePwdLp+k+k +ek+wyfF +rdkky+tg r+nrat+sgyWkatgkdke+++ +++ Aradu.22647 12 LPPGFRFHPTDEEIISYYLTHKVLNTSFTA-TAIGEVDLNKCEPWDLPQKAKMGEKDWYFFWQRDKKYPTGIRTNRATESGYWKATGKDKEIYK-GRN 107 79*************************999.88***************99999*****************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grap+g+kt+Wvmhe+rle Aradu.22647 108 LVGMKKTLVFYRGRAPHGHKTNWVMHEFRLE 138 ****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-61 | 9 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.794 | 12 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-28 | 13 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MDAEDHNHAL DLPPGFRFHP TDEEIISYYL THKVLNTSFT ATAIGEVDLN KCEPWDLPQK 60 AKMGEKDWYF FWQRDKKYPT GIRTNRATES GYWKATGKDK EIYKGRNLVG MKKTLVFYRG 120 RAPHGHKTNW VMHEFRLEGL FATYNLPKPA KEEWVVSRVF HKNTTEKLNP TIPSGLFRIM 180 KNVNSIEDDD LVDFSSLPPL MDPSNNYDDE HTTTTNNMFA SSSDYNITIQ QNKKDMMGIR 240 NNNIRALLMY DGPSSSSEVV APPLSDLELC LWDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-50 | 10 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-50 | 10 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-50 | 10 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-50 | 10 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-50 | 10 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-50 | 10 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-50 | 10 | 167 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-50 | 10 | 167 | 18 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.22647 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015946711.1 | 0.0 | NAC domain-containing protein 100 | ||||
Swissprot | Q9FK44 | 3e-99 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A445B1L0 | 0.0 | A0A445B1L0_ARAHY; Uncharacterized protein | ||||
STRING | AES80816 | 1e-107 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-102 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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