PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.1QN19

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 379aa MW: 42312.8 Da PI: 8.0478

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.1QN19	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.5	7.5e-06	172	191	1	20
CHHHHHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsaf 20 +r++h ++Er+RR+++N+ + Aradu.1QN19 172 QRMTHIAVERNRRRQMNDHL 191 79****************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.64E-9	164	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.59E-6	170	214	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MPFLQMLQSV EYSPNYSSQQ QCFFPFKDPT NFQTLLRLQH LKNHNNNNNN NNNNVQELDQ 60 KSCVTHDVMV EMQQQQQQSH SPVKSESYEL HQQHHQTSAS ASCCVENNNN NTTPTKAVTA 120 AIEKCGGRGN SNTQEVCQKS QQVGSVATTT TRERKKRKRT RPAKNKEDVE NQRMTHIAVE 180 RNRRRQMNDH LSGDQASIIG GAIDFVKELE QLLQSLEAQK RMRRKNNNNS SNKNEDAIGF 240 GSSSNSSSTT NGGYDGIMRS STTSLSLLST EEGNFGGGGG GNGDELKAEN KSESAEIEVI 300 LIQTHVNLKI QCKRRHGQLV KAIVALEDLR LSILHLNITS SSDDSVLYSL NLKIEEGCRL 360 RSANEIAEAV HHIFNFING

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MPFLQMLQSV EYSPNYSSQQ QCFFPFKDPT NFQTLLRLQH LKNHNNNNNN NNNNVQELDQ  60
KSCVTHDVMV EMQQQQQQSH SPVKSESYEL HQQHHQTSAS ASCCVENNNN NTTPTKAVTA  120
AIEKCGGRGN SNTQEVCQKS QQVGSVATTT TRERKKRKRT RPAKNKEDVE NQRMTHIAVE  180
RNRRRQMNDH LSGDQASIIG GAIDFVKELE QLLQSLEAQK RMRRKNNNNS SNKNEDAIGF  240
GSSSNSSSTT NGGYDGIMRS STTSLSLLST EEGNFGGGGG GNGDELKAEN KSESAEIEVI  300
LIQTHVNLKI QCKRRHGQLV KAIVALEDLR LSILHLNITS SSDDSVLYSL NLKIEEGCRL  360
RSANEIAEAV HHIFNFING

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	158	RKKRKR
2	154	159	KKRKRT
3	172	183	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.1QN19

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015948087.1	0.0	transcription factor bHLH67 isoform X2
Swissprot	Q9M128	2e-55	BH057_ARATH; Transcription factor bHLH57
TrEMBL	A0A445EHQ0	0.0	A0A445EHQ0_ARAHY; Uncharacterized protein
STRING	XP_007135328.1	1e-106	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6894	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01460.1	4e-27	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]