PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.18XUI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GATA | ||||||||
Protein Properties | Length: 362aa MW: 39790.7 Da PI: 6.4213 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.7 | 1.6e-18 | 277 | 311 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l Aradu.18XUI 277 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 311 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.978 | 271 | 307 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.43E-14 | 271 | 333 | No hit | No description |
SMART | SM00401 | 1.8E-16 | 271 | 325 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 275 | 309 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.47E-15 | 276 | 324 | No hit | No description |
Pfam | PF00320 | 2.0E-16 | 277 | 311 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 277 | 302 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MLYQTPHPLL FQFHPFPSSS STLPLSSYHL LIKVEERERE MECMVEGALK TSFRKEMGMG 60 MKYTTSPQRS FMEELQNGAP SDDFFVDQLL DFSQVDQQEE QQEEEQEHKK VGEDSACVSL 120 SPQQTNDVEE TFPSLPTTDL NLPDDVADLE WLSHFVEDSF SQFSPPIVPA AVPTSTPPAP 180 PQPCFNTPVP AKARSKRTRT GVRVWPLASP SFATTDSSST TATATSSTSS SPSSPLLIYA 240 TNLSQTMDQV SSDAPPKKPK KKASPEGGFP AQAPRRCSHC GVQKTPQWRT GPLGAKTLCN 300 ACGVRYKSGR LLPEYRPACS PTFSSELHSN HHRKVLEMRR KKETIGGGVD TSGLAPPVVP 360 SF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.18XUI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015964212.1 | 0.0 | GATA transcription factor 5 | ||||
Refseq | XP_025698954.1 | 0.0 | GATA transcription factor 5 | ||||
Swissprot | Q9FH57 | 1e-72 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A444WRC0 | 0.0 | A0A444WRC0_ARAHY; GATA transcription factor | ||||
STRING | XP_004512096.1 | 1e-106 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1108 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51080.1 | 2e-56 | GATA transcription factor 6 |