PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.0Y2W5

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 543aa MW: 62688.8 Da PI: 7.4698

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.0Y2W5	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.3	1.6e-20	43	117	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY +YA++vGF+vr+ + ++s+ ng++ +r++vCskeg++ + +rtgC a ++v+ + +gkw+v++++++HnH+l Aradu.0Y2W5 43 KFYTSYANRVGFKVRIGQLYRSRSNGSVSSRRYVCSKEGYQLS--------------SRTGCPAFIRVQINASGKWVVDHFQKDHNHDL 117 6************************************9765..............689*************************99 PP
2	FAR1	64.6	2.7e-20	196	270	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA vGF vr+ + +sk++g it+r+fvCskeg++++ +r+gC a l++k++ +gkw+v++l+++HnH+l Aradu.0Y2W5 196 QFYHAYAAYVGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHP--------------SRVGCGAYLRIKRQPSGKWVVDRLHKDHNHDL 270 6*************************************999..............4899************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-16	43	117	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.6E-16	196	270	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MILKENPVGT ELAMSNINVE EEIDFSCEPY IGLEFDSPDD ALKFYTSYAN RVGFKVRIGQ 60 LYRSRSNGSV SSRRYVCSKE GYQLSSRTGC PAFIRVQINA SGKWVVDHFQ KDHNHDLEIE 120 NGNCTPTVQQ KGAAAFKSFT EVSRRPRKKL LESCNESSGP MGIIDFKRLR KEELEGQFRT 180 EPYVGQEFGS PNEAYQFYHA YAAYVGFGVR IGQLFRSKND GLITSRRFVC SKEGFQHPSR 240 VGCGAYLRIK RQPSGKWVVD RLHKDHNHDL GSEREGRPKS IPDSNILAEE SQTVDEFDAT 300 WAALLNKYGL KDNPWLKEMY EKRASWVPLY LRGTFFAGIP MNESVDSFFG AILNGQTSLV 360 EFIPRYERGL ERRREEERNE DFNTSNFQPF LQTKEPVEEQ CRRLYTLTIF KVLQKELLQC 420 YSYLGFKAFQ EGSISRYMIL ELREVPSRYI LHRWTKNAED GVFPDLESWS SSQELRSLML 480 WSLRETAAKY IDAGATSIEK YKLAYEILRE GGRKLCWHSR LIPSLEITDF LDGLTLEPSY 540 DKV

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MILKENPVGT ELAMSNINVE EEIDFSCEPY IGLEFDSPDD ALKFYTSYAN RVGFKVRIGQ  60
LYRSRSNGSV SSRRYVCSKE GYQLSSRTGC PAFIRVQINA SGKWVVDHFQ KDHNHDLEIE  120
NGNCTPTVQQ KGAAAFKSFT EVSRRPRKKL LESCNESSGP MGIIDFKRLR KEELEGQFRT  180
EPYVGQEFGS PNEAYQFYHA YAAYVGFGVR IGQLFRSKND GLITSRRFVC SKEGFQHPSR  240
VGCGAYLRIK RQPSGKWVVD RLHKDHNHDL GSEREGRPKS IPDSNILAEE SQTVDEFDAT  300
WAALLNKYGL KDNPWLKEMY EKRASWVPLY LRGTFFAGIP MNESVDSFFG AILNGQTSLV  360
EFIPRYERGL ERRREEERNE DFNTSNFQPF LQTKEPVEEQ CRRLYTLTIF KVLQKELLQC  420
YSYLGFKAFQ EGSISRYMIL ELREVPSRYI LHRWTKNAED GVFPDLESWS SSQELRSLML  480
WSLRETAAKY IDAGATSIEK YKLAYEILRE GGRKLCWHSR LIPSLEITDF LDGLTLEPSY  540
DKV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.0Y2W5

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015958695.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_015958696.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_016197380.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_016197381.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_025645767.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_025645768.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_025693782.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_025693783.1	0.0	protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9M8J3	1e-104	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2H5N7E0	0.0	A0A2H5N7E0_CITUN; Uncharacterized protein (Fragment)
STRING	GLYMA15G10830.1	1e-167	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	5e-98	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]