PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.0K58L | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 26186.8 Da PI: 7.7996 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.4e-11 | 22 | 71 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++Er+RR+++++ +++L +llP+ + p + l + +Av+YIksL+ Aradu.0K58L 22 ERKIIERNRRNKMKDLYSKLNSLLPSyS---PTEVLPLPDQIDEAVKYIKSLE 71 5689**********************55...8888****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.89E-12 | 17 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.011 | 18 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.35E-6 | 20 | 70 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-10 | 20 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.8E-8 | 22 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-4 | 24 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDHHQQQQHQ QGSEPSTTTK VERKIIERNR RNKMKDLYSK LNSLLPSYSP TEVLPLPDQI 60 DEAVKYIKSL EKKVKMAKEK KERLLKGRNN KKRSRGFDEK NITKSPMIDV HEMGNSLLQV 120 VLTCGFENKF LFNEIIRILH EEKVEIVSVN SSSQPGDSMI HVLHAEIPSA FQQFGAARVS 180 ERLKRFVNGS ISDVDIDPGF WDDFEIDTDI WELPDLSSVV SKGFPNPL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.0K58L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015936246.1 | 1e-168 | transcription factor bHLH162-like | ||||
TrEMBL | A0A445BXX7 | 1e-146 | A0A445BXX7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA12G12880.1 | 1e-81 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 8e-25 | bHLH family protein |