PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.06BAT
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 636aa    MW: 69675.4 Da    PI: 5.771
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.06BATgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.52.3e-1132646362374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++L+ecA  +s+ +  +a++ L++l++ +s++g+p+qR+ +yf+eAL ++l+    +    a+  ++++ ++s+e +  +k++++++P+ kf+hlta
  Aradu.06BAT 264 LKALTECAL-LSETEPDQASESLSQLRKSVSQNGNPIQRVSFYFAEALTRKLTFeREKDKNLAMVETASTATTSEELTLCYKALNDACPYSKFAHLTA 360
                  6899****8.67779999**********************************983334444455666666677999999******************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  NqaIlea+eg++r+Hi+Df+i qG+QW+aLlqa+a+R++g+p s+Ri g+ +++ g   + +l++tg+rL++fA+ l+++fef++ + + +++l+ ++
  Aradu.06BAT 361 NQAILEATEGSSRIHIVDFGIVQGIQWAALLQAFATRSSGKPeSIRISGIPAMALGtsPAASLSATGNRLSEFAKLLELNFEFRP-ILTPIHELNESS 457
                  **************************************77776*********99889999*************************.799********* PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  + v+p+EalaVn++lql++llde+ +  +   + L+l ksl+Pk+v++ e ea+++++ F++rf +al+yys++f+sle +++++s er+ vEr+l+g
  Aradu.06BAT 458 FCVDPNEALAVNFMLQLYNLLDETPDAVE---AALRLAKSLRPKIVTLGEYEASLTRGGFMKRFKNALRYYSSVFESLEPNMAPDSPERMQVERHLFG 552
                  *********************99999998...9***************************************************************** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  r+i+ vv   g+  rer+e +e+Wr  +e++GF++v+ls++a +qak ll +++ s  y++ e++ +++ l Wkd pL++vS+Wr
  Aradu.06BAT 553 RRISGVVGLPGTV-RERMEDKEQWRVLMESCGFESVSLSHYAISQAKILLWNYSySSLYSLVESKPEFLsLAWKDVPLLTVSSWR 636
                  ************9.9***************************************9999******999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.217237614IPR005202Transcription factor GRAS
PfamPF035147.8E-111264636IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQQEQQQH NHHSHNHHHH QQQQQQQNQQ HLLGINPLSL  60
HPWNNTPPLG FPLTPTNDFP DPFQVGSGPD NPDPAFHFPP PLEPHSSSSF RFSDFAAATF  120
DSDEWMDTLM ATAAGDSTDT STIPAAAAAA AWHNGNSDFG LYGSSPFTTC PTRLSPTSDL  180
NRVIFSSEPH TAAVTTTAAA TGVSLQQAQL PATWATPPPL PPPTAVKEAP KMVASSPPAP  240
PQAPATVQGG FSSLPEPDSS HPLLKALTEC ALLSETEPDQ ASESLSQLRK SVSQNGNPIQ  300
RVSFYFAEAL TRKLTFEREK DKNLAMVETA STATTSEELT LCYKALNDAC PYSKFAHLTA  360
NQAILEATEG SSRIHIVDFG IVQGIQWAAL LQAFATRSSG KPESIRISGI PAMALGTSPA  420
ASLSATGNRL SEFAKLLELN FEFRPILTPI HELNESSFCV DPNEALAVNF MLQLYNLLDE  480
TPDAVEAALR LAKSLRPKIV TLGEYEASLT RGGFMKRFKN ALRYYSSVFE SLEPNMAPDS  540
PERMQVERHL FGRRISGVVG LPGTVRERME DKEQWRVLME SCGFESVSLS HYAISQAKIL  600
LWNYSYSSLY SLVESKPEFL SLAWKDVPLL TVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1472606361375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.06BAT
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952823.10.0scarecrow-like protein 4
RefseqXP_025686925.10.0SCARECROW-LIKE protein 7-like
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A445E2E40.0A0A445E2E4_ARAHY; Uncharacterized protein
STRINGcassava4.1_003937m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-162GRAS family protein