PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G433200.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YA
Protein Properties Length: 280aa    MW: 31039.5 Da    PI: 7.8704
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G433200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.67.7e-32126182158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        dep++VN+KQy+ Il+RRq+Rakle+++kl  k rkpylheSRh hAl+R+Rg++GrF
  Aqcoe7G433200.2.p 126 DEPIFVNSKQYHCILRRRQSRAKLEAQNKL-VKDRKPYLHESRHLHALKRARGCSGRF 182
                        79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.1E-36124185IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.094125185IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-26127182IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.0E-22128150IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860130150IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.0E-22159182IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDSSPNNYHV KQFQDQDSTS TQSTGQSHCE GETIGGNTDG KCISGYSGNN EAYKWRANSN  60
NQSVFSQEAS HLTFPQSQSI VHMPYPYACP YYGGYLPAIG TQFVMHPQIM GMAPARVQLP  120
PDYGEDEPIF VNSKQYHCIL RRRQSRAKLE AQNKLVKDRK PYLHESRHLH ALKRARGCSG  180
RFLNKKKLQP SDDDRSALDP ASHHMDGSLS EPEVVKSESG NVCTFTTSCA SLTSISSKDD  240
LLQPSKHWLS GYHPHMGENM QDGGGITFNG SQLRVSVLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19126200277NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261975.12e-74PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLA0A2G5DI150.0A0A2G5DI15_AQUCA; Uncharacterized protein
STRINGAquca_020_00519.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.12e-39nuclear factor Y, subunit A6