PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G421900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 295aa    MW: 32456.9 Da    PI: 10.1334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G421900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.6e-08148193555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ner r+RR++i ++   L +l+P+      kKl+  ++  +A +YIk Lq
  Aqcoe7G421900.1.p 148 PNERARKRRKDITEKTRLLAKLMPWE-----KKLDTGTMFGEAYKYIKFLQ 193
                        59***********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-10142205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.563143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5148193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-8149200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-8149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-6149196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MENKPSSSSY SSSVFAFPPI LTSNHQKQLP KPEPIDSSHF PDLNDEWIYQ LPTLHSLEEN  60
NNTNIKKNKN NNNKMKMKNL PISVSTKRFR SSSPPLPLPP PPPSATTSTT NDSYTLEAIV  120
RNHLRPPSSS PLLLPSSSST TSSSSLSPNE RARKRRKDIT EKTRLLAKLM PWEKKLDTGT  180
MFGEAYKYIK FLQAQVNVLQ SMPFQSSFIS SSKPPPCGGV GGGDGGGGTT SATFGGLEKL  240
NRQQLLQVLV NSPVAQTAFS SQQCCVYSLE QVLWLKKNLM EQMLLLGSSF GPYY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157RKRRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-12bHLH family protein