PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G411200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 346aa    MW: 38407.3 Da    PI: 5.9205
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G411200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.14.9e-18239273135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Aqcoe7G411200.1.p 239 CLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRL 273
                        99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-829324IPR016679Transcription factor, GATA, plant
SMARTSM004011.8E-16233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.308233269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.7E-14234271IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.14E-15235297No hitNo description
CDDcd002021.30E-14238285No hitNo description
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
PfamPF003207.0E-16239273IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MESQDFCYSA GNTQQFTPEK QQKSVENFVI EDLLDFSNGD VIGDVTFDSI NGNSTDSSTV  60
TVVDSCNSSF SVNDPHFSGD FGFQQQQQHN FPDSQLSGEL CVPCDDIAEL EWLSNFVEES  120
FSSEDLAKLQ LISGMKTEVI SETRESQTET NRNNNHHYHH PIFQSEVSVP GKARSKRSRV  180
APCNWSSRLL VLSPTTTATT TTTTTASSSE SDISSNSGKK ATKVYKKKEI SEHGDGRRCL  240
HCATDKTPQW RTGPLGPKTL CNACGVRYKS GRLVPEYRPA SSPTFVLAKH SNSHRKVMEL  300
RRQKEMQSCQ QEQFLYPNAL FDVSGGSVDD YLIHHQTGSD FAQMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249552.11e-163PREDICTED: GATA transcription factor 12
SwissprotP697811e-88GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2G5DH020.0A0A2G5DH02_AQUCA; GATA transcription factor
STRINGAquca_020_00318.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-86GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]