PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G386400.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

YABBY

Protein Properties

Length: 136aa MW: 15368.3 Da PI: 9.2313

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G386400.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	131.5	1.1e-40	20	108	82	170
YABBY 82 lksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 l+ +++ ++ sts + +k+s ++ + + rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+i fgl Aqcoe7G386400.3.p 20 LQDHKIDHQLGSTSSKCNKISMLSSATNNEERIIHRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIQFGL 108 34444444444444444444444444444444578****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.1E-40	11	108	IPR006780	YABBY protein
SuperFamily	SSF47095	4.97E-9	44	102	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.2E-5	56	102	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MAAALQSLSW QDLQTQSFPL QDHKIDHQLG STSSKCNKIS MLSSATNNEE RIIHRPPEKR 60 QRVPSAYNQF IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIQFGLML EANNQAKMNE 120 GAEKHLMTTA ALFNN*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010254434.1	3e-68	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	4e-49	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2G5DG19	1e-95	A0A2G5DG19_AQUCA; Uncharacterized protein
TrEMBL	A0A2G5DGR6	6e-96	A0A2G5DGR6_AQUCA; Uncharacterized protein
STRING	Aquca_020_00105.1	2e-96	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-51	YABBY family protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G386400.3.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]