PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G386400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | YABBY | ||||||||
Protein Properties | Length: 187aa MW: 20919.8 Da PI: 7.7722 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 208.5 | 2.4e-64 | 7 | 159 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 seqvCy+ CnfCn ilavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ +++ + ++++++ + +++s+ +++ Aqcoe7G386400.1.p 7 VPSEQVCYIPCNFCNIILAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSWQDL-QTQSFP-------LQDHKIDHQLGSTSSKCNKI 90 579*********************************************9999999884.443333.......33333333333333344444 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+ + +n++e + rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+i fgl Aqcoe7G386400.1.p 91 SMLSSATNNEERII-----HRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIQFGL 159 44332344444444.....6****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.9E-71 | 8 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.01E-8 | 95 | 153 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.4E-4 | 107 | 153 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MSSCTNVPSE QVCYIPCNFC NIILAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAALQSLS 60 WQDLQTQSFP LQDHKIDHQL GSTSSKCNKI SMLSSATNNE ERIIHRPPEK RQRVPSAYNQ 120 FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIQFGLM LEANNQAKMN EGAEKHLMTT 180 AALFNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010254434.1 | 1e-108 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 4e-84 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A2G5DFW9 | 1e-137 | A0A2G5DFW9_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_020_00105.1 | 1e-130 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-86 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G386400.1.p |
Publications ? help Back to Top | |||
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