PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G309900.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SBP
Protein Properties Length: 264aa    MW: 29741 Da    PI: 9.5483
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G309900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.2e-41148224177
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        +Cq+egC+ dls+ak+yhrrhkvCe+hska++v++ gleqrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+q
  Aqcoe7G309900.3.p 148 RCQAEGCKIDLSNAKHYHRRHKVCEFHSKATKVVAGGLEQRFCQQCSRFHVLAEFDQAKRSCRKRLADHNRRRRKPQ 224
                        6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-34142210IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.65146223IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.28E-39147226IPR004333Transcription factor, SBP-box
PfamPF031101.9E-31149222IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVSYVGLQSN NYKQLWDWET NPYNPNTSTT STTTNGNNNN HNPFITNSTN IFDCSHLSTL  60
PSSSFHGNLN FIPSSQFSEE YPSVDFLKKE GDNAEEFTMD MNNYYNGNGG RIGLNLGHRT  120
YFSSRETALI DRLFRRPRGF YQANQIPRCQ AEGCKIDLSN AKHYHRRHKV CEFHSKATKV  180
VAGGLEQRFC QQCSRFHVLA EFDQAKRSCR KRLADHNRRR RKPQLGQSTT DDSVVVLPAA  240
AAAGAIKASE NGGSISFNIK IRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-291492221184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205222KRSCRKRLADHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408821.11e-70PREDICTED: squamosa promoter-binding-like protein 8
RefseqXP_026404059.11e-69squamosa promoter-binding-like protein 8
RefseqXP_026457660.18e-70squamosa promoter-binding-like protein 8
TrEMBLA0A2G5DBC70.0A0A2G5DBC7_AQUCA; Uncharacterized protein
STRINGAquca_024_00116.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-50squamosa promoter binding protein-like 8