PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G306400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 202aa MW: 23943.2 Da PI: 8.6056 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 89 | 143 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +t+eq+ Le+ F++++ ++++++ +LA++l+L+ rqV vWFqNrRa+ k Aqcoe7G306400.1.p 89 RKKLVLTHEQVMMLEQNFRQHNVLTQTKKHDLADQLNLQPRQVEVWFQNRRARTK 143 677789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 102.4 | 3.7e-33 | 89 | 177 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+ l++eqv +LE++F++++ L++++K++la +L+lqprqv+vWFqnrRARtk+kq E d+e+ k+ +++l++en+rL+ e ++Lr+ Aqcoe7G306400.1.p 89 RKKLVLTHEQVMMLEQNFRQHNVLTQTKKHDLADQLNLQPRQVEVWFQNRRARTKLKQREIDCEFWKTYCESLRDENRRLKIELQDLRS 177 6999***********************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.84E-18 | 75 | 147 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.054 | 85 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-14 | 87 | 149 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.4E-16 | 89 | 143 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-18 | 89 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.93E-13 | 89 | 146 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 8.2E-13 | 145 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEEVKECNIS LGLGLGSSEF LPTLKEYKQQ IMFHLSFPPQ MKEETDNEVQ NFERFSSRTT 60 DDEVENKINS SNVYSNKIHS NKTNKIAIRK KLVLTHEQVM MLEQNFRQHN VLTQTKKHDL 120 ADQLNLQPRQ VEVWFQNRRA RTKLKQREID CEFWKTYCES LRDENRRLKI ELQDLRSRKL 180 GSSAYCVHLP LAMNPSYDKY E* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 145 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | P46604 | 8e-37 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A2G5DBI3 | 1e-148 | A0A2G5DBI3_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_024_00151.1 | 1e-149 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 5e-39 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G306400.1.p |
Publications ? help Back to Top | |||
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