PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G297100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HB-PHD
Protein Properties Length: 726aa    MW: 82620.4 Da    PI: 9.8176
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G297100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.6e-10499551353
                        --SS--..HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
           Homeobox   3 kRttft..keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                        kRt f   ++ ++ L ++F+++  ps+  re L+k+lg+  +++  WF+N R+
  Aqcoe7G297100.1.p 499 KRTLFRipPDAVKKLRAVFAETELPSRVVRESLSKQLGIAIEKINKWFKNARY 551
                        555543338999****************************************8 PP
2PHD34.25.9e-12229284151
                        SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                        +C+ C+   +  +++++lCdg C+ +fH+kCl+++l +e++p g   w+C+ C++k
  Aqcoe7G297100.1.p 229 FCSKCKLreAFPDNDIILCDGaCNCAFHQKCLEPPLATENIPPGdqGWYCKFCECK 284
                        699999854555********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-13219286IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.9E-11225284IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.202227284IPR019787Zinc finger, PHD-finger
SMARTSM002497.3E-7229282IPR001965Zinc finger, PHD-type
PfamPF006284.1E-9229284IPR019787Zinc finger, PHD-finger
CDDcd155047.07E-32229281No hitNo description
PROSITE patternPS013590230281IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003891.6E-9496560IPR001356Homeobox domain
PROSITE profilePS5007111.483496556IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-10497550IPR009057Homeodomain-like
CDDcd000863.07E-8498560No hitNo description
SuperFamilySSF466891.03E-9498563IPR009057Homeodomain-like
PfamPF000462.3E-7499551IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MQDGGNLGFP KKRVGSQINT SFQKKNSCKN PHIRRWKPKP RSHVKTIASF LSKRKTSELS  60
SNRARNKCSN GKPFRRRASQ KPNDTSPSDR PLSSMLKDFK LLSNKCQGRE KTTDKDLGSQ  120
KAHRRRRSKK RKNEELDEAA RVQRRTRYLL IKMKLEQNLI EAYSGEGWKG QSREKIKPEK  180
ELQRAKKQIL KCKLGIRDAI RQLESLSSEG SIEDSVIGSD GSVFHEHIFC SKCKLREAFP  240
DNDIILCDGA CNCAFHQKCL EPPLATENIP PGDQGWYCKF CECKMAILDA INAHLGTQFS  300
LDSKWQDIFM EAANARDNED ISIHPDGDWP SDDSEDVDYD PEKYEIDCSY SRMGSEHNVS  360
DDASSSGTLY WTSEEDDGLH SERFRTDGSL EGGFYGDKTK IQSSDSIDSN DSTDGMAFHR  420
RQRRDVDYKK LHDEMFGKDM PESEEISEDE DWGPRRRKRR RNESNAATTL VSSCGTENEF  480
SNVALKKDRK KFPLFPARKR TLFRIPPDAV KKLRAVFAET ELPSRVVRES LSKQLGIAIE  540
KINKWFKNAR YTALKIRKAE KTEQSPGGGK MQSADVLTSK ENHYLVSTGT AVQRSKVSSV  600
HRSKNRKLTT TPSREVQEKV SAVAPSATAN EVSVQLRKAV SVEKEMGSVK RKSAQVKRIK  660
RTCSTKEQQL YMIELERICR LEEKLEKMKK VLLSIDDNHS NVSDGPHMNE QSAVYIPVAE  720
LREKM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131RRSKKRK
2453457PRRRK
3454460RRRKRRR
4456460RKRRR
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273544.10.0PREDICTED: pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-137PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A2G5DJS60.0A0A2G5DJS6_AQUCA; Uncharacterized protein
STRINGAquca_018_00077.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-135pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]