PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G294700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 331aa MW: 37664.2 Da PI: 6.9125 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.4 | 1.8e-13 | 22 | 63 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+ +s r+ tf +R++g+ KK +E +LC++++++ii+++++ Aqcoe7G294700.1.p 22 ISKESARNATFVRRKKGLEKKIYEFATLCGVDACMIIYGPNN 63 88999***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.652 | 12 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.3E-14 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.98E-18 | 13 | 110 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.03E-19 | 13 | 103 | No hit | No description |
PRINTS | PR00404 | 2.5E-7 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-16 | 22 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-7 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-7 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MLISCYGLFM QMGRAKLDLR LISKESARNA TFVRRKKGLE KKIYEFATLC GVDACMIIYG 60 PNNRNNACMS KPETWPRNED EVYRIIDNYK KYEKEKRSLG LADSFSVQKK KLGDELAKLR 120 KKNDEISQQS WEDRIYDLSK DQMEQLLPMI DSKIEMINAK MISIEMMNQN MIQEAGTGMF 180 GNTQAPPQNH PFLIPINFNG NAWNNNLLPM QTQPISYAVP PGHHMMQMEY PSNLPMFLDQ 240 GQMMNSMMMI NGNNGDCSNM VPAGDLSFIA FQHPYYQDQG LRPSDEYGSM DQAPSTFYLP 300 ANTQSMSSPY VPNLMPGSSG QLPSYRPPNF * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX680243 | 0.0 | JX680243.1 Aquilegia coerulea MADS-box protein AGL86 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | K7X6Q5 | 0.0 | K7X6Q5_AQUCA; MADS-box protein AGL86 (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 7e-23 | AGAMOUS-like 82 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G294700.1.p |