PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G292300.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NAC

Protein Properties

Length: 319aa MW: 36074.6 Da PI: 8.8478

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G292300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.8	3e-55	11	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL++k+++ +++ +++++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat +gyWk+tgkdke+ Aqcoe7G292300.2.p 11 LPPGFRFHPTDEELITYYLHNKISDASFTG-RAVADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATIAGYWKTTGKDKEI 101 79***********************999.88***********99999************************************* PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++elvg+kktLvfykgrap+gekt+Wvmheyr+ Aqcoe7G292300.2.p 102 FNSnSSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRI 138 9867788**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.28E-62	9	159	IPR003441	NAC domain
PROSITE profile	PS51005	60.719	11	159	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MDGGANKEET LPPGFRFHPT DEELITYYLH NKISDASFTG RAVADVDLNK CEPWDLPGKA 60 KMGEKEWYFF SLRDRKYPTG VRTNRATIAG YWKTTGKDKE IFNSNSSELV GMKKTLVFYK 120 GRAPRGEKTN WVMHEYRIHS KTTFRTTKDE WVVCRVFQKS AGGKKYPTNQ SRAIPYNLEM 180 VQNAMHPQMM QNDACHFPSG RNYVSNADLA ELLRVSRGAP SGNLHMQPQL NNYPGSFTIS 240 GLNLNLGTST QPPPMIYRPM APPNLHQQIS ATDAMLTNQH VLANDNGCST DMNGTAGNNR 300 FQQHMDPCVD LENYWNTY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-56	10	165	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-56	10	165	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-56	10	165	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-56	10	165	16	171	NO APICAL MERISTEM PROTEIN
4dul_A	8e-56	10	165	16	171	NAC domain-containing protein 19
4dul_B	8e-56	10	165	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010277182.1	1e-167	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	6e-86	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2G5DKS1	0.0	A0A2G5DKS1_AQUCA; Uncharacterized protein
STRING	Aquca_018_00116.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-101	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Aqcoe7G292300.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]