PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G284000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARF
Protein Properties Length: 1161aa    MW: 129302 Da    PI: 6.7252
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G284000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.7e-22131232199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++lt +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  Aqcoe7G284000.1.p 131 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELTARDLHDNAWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI-- 218
                        99*****************************954.4444.48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++++l+++++r+
  Aqcoe7G284000.1.p 219 RDEKQQLLLGIRRA 232
                        5688889****997 PP
2Auxin_resp120.21.6e-39257340183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldp+rW+nS+Wr+L+
  Aqcoe7G284000.1.p 257 AAHAAANNSPFNVFYNPRASPSEFVIPLAKYYKAVYnNQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPLRWKNSQWRNLQ 340
                        79********************************98799*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-44120260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-41122246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-18130222No hitNo description
SMARTSM010197.1E-22131233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026131233IPR003340B3 DNA binding domain
PfamPF023621.1E-20131232IPR003340B3 DNA binding domain
PfamPF065071.1E-34257340IPR010525Auxin response factor
PfamPF023097.1E-710281114IPR033389AUX/IAA domain
PROSITE profilePS5174528.09310291113IPR000270PB1 domain
SuperFamilySSF542777.85E-710471107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1161 aa     Download sequence    Send to blast
MKAPATGAML TATANSSEGE RKSINAELWH ACAGPLVTLP PVGSLVVYFP QGHSEQVAAS  60
MQKDIDAHIP NYPNLPSKLI CLLLNVTLHA DAETDEVYTQ MTLQPVSSYD KEALLASDLA  120
LKSNKPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LTARDLHDNA  180
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD EKQQLLLGIR RANRQPTNIS  240
SSVLSSDSMH IGILAAAAHA AANNSPFNVF YNPRASPSEF VIPLAKYYKA VYNNQVSLGM  300
RFRMMFETEE SGTRRYMGTI TGISDLDPLR WKNSQWRNLQ VGWDESTAGE RRNRVSIWEI  360
EPVAAPFFIC PPPFFRSKRP RQPGMPDDES ADLENLFKRT MPWLGDDICI KDPQSQTAIM  420
PGMSLAQWMN MQQNPSLSNP AMQPDYMRSL TSPVLQNLAA ADLSRQLGLI GPQALQQNNL  480
QFNTQRPPQQ AQQLDQLPKL PTTLNQLGSL MQMQQQLDGN GLQQRQNLIN QSFSGSHVQA  540
QAQLLQPQVQ VQNNSHQQQS LVQNHQSQPN LQHNQQQQKQ QQQHQQQQHL HQQQQQQQQQ  600
QQQQQQQQQQ QQQQQQQQQL QQQQQQQQLN NAQNQHQNRI PVQHPHQVNQ HLQMSEQHVQ  660
LLQKLQQQQQ SLLSQQSPLQ QHPQLTQFQE QQRQILEMPQ NLSNPNSLSQ QHMIQQQMMK  720
NNSQQGIGFS NLSQHQSPSK LQHQHSMLGE LPGLVLPHEP TTNMLSTASS GLLVAAGNGG  780
HSVFTEDVPS CSTSPSTNCP NVVQSTINSR IHCSTVIPDE MVQSAGTLLS PSALEPVSGP  840
SLVKELQSKS DVKPSLPNSK TQSQGMTSQT YLHAAGQLDY LEASSSATSV CLSQNDGSLQ  900
QNFQLPSFNP QSMLFRETSH DGDVQVDPRN NVLFGVNIDG PLGIPFTPDP LLAKGVGSVK  960
DSPNHLSSGN MLTNYGNSKD VQQELSSSMV SQSFGVPDLA FNSIDSTISD SGFLNQGPWA  1020
PPPQLQRMRT FTKVYKRGAV GRSIDIARYS GYDELKQDLA RRFGIEGQLE DRQRIGWKLV  1080
YVDHENDVLL VGDDPWEEFV NCVRCIKILS PQEVQQMSLD GDLATSVLPN QACSSSDGGN  1140
AWRNGHCEQN SGNPSGGSYE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691936145388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263344.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLA0A2G5DL090.0A0A2G5DL09_AQUCA; Auxin response factor
STRINGAquca_018_00174.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19