PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G283200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | GRAS | ||||||||
Protein Properties | Length: 191aa MW: 21448.1 Da PI: 5.2393 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 217.7 | 5.8e-67 | 2 | 180 | 194 | 374 |
GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284 +++++gE++aVn+v++lh+ll++s++l++ vL+ +k+++Pk++++veqea+hn+++F +rf+eal+yys+lfdsl e l++ s+++ Aqcoe7G283200.1.p 2 FDLRHGETIAVNSVFELHQLLAQSGALNK----VLSSIKEMKPKIITIVEQEANHNGPNFIDRFTEALHYYSSLFDSLeEYPLSPLSNQDLI 89 68899************************....*********************************************9999********** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++++gr+i+n+v+ceg +r+erhe l++Wr+rle+aGF+ +l++++ q+++ll +++ + gy+vee++g+l+lgW++rpLv+ SaW+ Aqcoe7G283200.1.p 90 MSEMYFGRQICNIVSCEGVDRTERHECLNQWRNRLESAGFSLSHLGSNTFRQVNSLLTMFDaGSGYNVEENNGCLLLGWHTRPLVASSAWQ 180 ******************************************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 28.709 | 1 | 159 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-64 | 2 | 180 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MFDLRHGETI AVNSVFELHQ LLAQSGALNK VLSSIKEMKP KIITIVEQEA NHNGPNFIDR 60 FTEALHYYSS LFDSLEEYPL SPLSNQDLIM SEMYFGRQIC NIVSCEGVDR TERHECLNQW 120 RNRLESAGFS LSHLGSNTFR QVNSLLTMFD AGSGYNVEEN NGCLLLGWHT RPLVASSAWQ 180 IGSSIKSECN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 6e-24 | 2 | 180 | 289 | 473 | Protein SHORT-ROOT |
5b3h_B | 3e-24 | 2 | 180 | 235 | 419 | Protein SHORT-ROOT |
5b3h_E | 3e-24 | 2 | 180 | 235 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010264458.1 | 2e-93 | PREDICTED: DELLA protein GAI1 | ||||
Swissprot | Q8S4W7 | 7e-88 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A0A2G5CCG5 | 1e-139 | A0A2G5CCG5_AQUCA; Uncharacterized protein | ||||
TrEMBL | A0A2G5F7G9 | 1e-133 | A0A2G5F7G9_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_002_01300.1 | 1e-134 | (Aquilegia coerulea) | ||||
STRING | Aquca_064_00017.1 | 1e-140 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 7e-84 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G283200.1.p |