PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G192900.8.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 227aa    MW: 26009.8 Da    PI: 8.352
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G192900.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.9e-12361131699
                        EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        + +p +f+eehg+k   + +l+l+ ++g  W++k+  +k ++r+   +GW++Fv+   + +g  + F++dg s+f   v ++++
  Aqcoe7G192900.8.p  36 IEFPSEFVEEHGYK--LPDELVLKVRTGDFWNIKV--KKFGERIRTLRGWQGFVEHYSIGVGYCLFFTYDGISSF--DVVICDA 113
                        5689*******999..7889***************..99999988888*********************999999..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-1521113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.75721114IPR003340B3 DNA binding domain
CDDcd100171.38E-1225112No hitNo description
SMARTSM010191.8E-825114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.24E-1526113IPR015300DNA-binding pseudobarrel domain
PfamPF023628.7E-935113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAELKLKQKG DNPSPSIVRM KRNKFFRVIK SRYPQIEFPS EFVEEHGYKL PDELVLKVRT  60
GDFWNIKVKK FGERIRTLRG WQGFVEHYSI GVGYCLFFTY DGISSFDVVI CDAEDAEIDY  120
PLKPHKFKNT IHGGAKLGES TNKECVKNST KNLGMTSPRE DTHQRTEHGE PSVYRANEDM  180
APEDVPAPKQ VSQKCLFNCF SLPCRVYFLF IIWSAEIYAS AMTGFL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5FBA81e-169A0A2G5FBA8_AQUCA; Uncharacterized protein
STRINGAquca_001_00601.11e-140(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.16e-14B3 family protein