PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G157900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 356aa    MW: 39538.5 Da    PI: 7.0146
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G157900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15e-18249283135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +C t kTp+WR gp g+ktLCnaCG+++++ +l
  Aqcoe7G157900.1.p 249 CLHCATDKTPQWRTGPLGPKTLCNACGVRFKSGRL 283
                        99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.0E-8321339IPR016679Transcription factor, GATA, plant
SMARTSM004012.2E-16243293IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.11243279IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-15245306No hitNo description
Gene3DG3DSA:3.30.50.107.3E-14246281IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.85E-13248295No hitNo description
PROSITE patternPS003440249274IPR000679Zinc finger, GATA-type
PfamPF003207.8E-16249283IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEAPEFFQNN NYCNNSRTNG NNSHQFTPEK RHSDSKQQSD HFIIEDLLDF SNEDISIGGD  60
GMFDNITAGN STDSSTVTVV DSCNSSTFSG SEPHFTCDTG SRNFPKAQFS GELCVPYDDL  120
AELEWLSNFV EDSFSSDDLQ KLQLISGMKA RTNEVSEETS DYQPENNRNN PIFAADVSVP  180
GKARSKRSRA VPCNWSSRLL VLSPTTSSSK IDIPAPSNST GKKTIKAKLK NKEVSDNVTG  240
GGNGDGRRCL HCATDKTPQW RTGPLGPKTL CNACGVRFKS GRLVPEYRPA ASPTFQLTQH  300
SNSHRKVLEL RRQKEMQRSH QHPQQYMHHN GMFNVSNGDE YLIHHHGGSD YRQLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249552.11e-179PREDICTED: GATA transcription factor 12
SwissprotP697813e-89GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2G5F9Y00.0A0A2G5F9Y0_AQUCA; GATA transcription factor
STRINGAquca_001_00309.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-91GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]