PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G128500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 309aa    MW: 33806.9 Da    PI: 8.9935
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G128500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18180213134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        Cs C+tt TplWR+gp g+ktLCnaCG+++rk +
  Aqcoe7G128500.1.p 180 CSDCNTTRTPLWRSGPKGPKTLCNACGIRQRKAR 213
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-13173213No hitNo description
SMARTSM004011.0E-18174225IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.809178210IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.5E-15178213IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.21E-11179207No hitNo description
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
PfamPF003204.9E-16180213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTSSTHFLPP LEPNDDHLYF PFLSSPPSQA SFSSSSSLIS PTAFHPYQDQ ERNYNRELLK  60
QYHQESQEVD EYVSHGGSSD QQSLSPPSLS SLESGNDYGL KLSIFEGDQL KDDSSPSDNK  120
GPVSWMSSKM RLMKKMINSD ADKPIRSKLW FQDQTQLSSP STTNITGDNL ASNNPMIRTC  180
SDCNTTRTPL WRSGPKGPKT LCNACGIRQR KARRAIAAAA AVASDGVPAI NTSSMQKKVH  240
CSKKKSGKGH VGQHKKQSKL TPIGRKNHGF EDFILNLSNN LALHRVIPQD ETEAAILLMA  300
LSCGLVNG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914096.11e-63GATA transcription factor 21-like
TrEMBLA0A2G5F8K60.0A0A2G5F8K6_AQUCA; Uncharacterized protein
STRINGAquca_001_00071.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.18e-20cytokinin-responsive gata factor 1