PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G122900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 297aa    MW: 32597.1 Da    PI: 10.0221
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G122900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.8e-12555146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       +++WT+eE++ l  +v+++G+g Wk I +          R+  ++k++w++
  Aqcoe7G122900.1.p  5 KQKWTAEEEDALRAGVTKHGTGKWKNIQKDPEfshylAARSNIDLKDKWRN 55
                       79***********************************99**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.933161IPR017930Myb domain
SuperFamilySSF466894.45E-15257IPR009057Homeodomain-like
SMARTSM007171.4E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-14456IPR009057Homeodomain-like
PfamPF002492.8E-8555IPR001005SANT/Myb domain
CDDcd116606.48E-20656No hitNo description
Gene3DG3DSA:1.10.10.101.2E-13129201IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.2E-16130195IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.697132200IPR005818Linker histone H1/H5, domain H15
PfamPF005381.1E-9134193IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.44E-14134207IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGAPKQKWTA EEEDALRAGV TKHGTGKWKN IQKDPEFSHY LAARSNIDLK DKWRNMSVSA  60
SGQGSRDKVR TPKMKALPPI PPVQNPTPIS TLTTTPTPAL PSSNSKTPTS NALVLYEPAD  120
TLMDSSKSAA EGKTKYNTMI FDAITGLKDP TGSDIGAIMN FIEAKQVVPP NFRRVLSSKL  180
RRLVSQDKLE KVQNNYKIKK DGSFGPRIGS NQKQKDDQHS KQSPSIANKI RLEEIENAAS  240
SAAYMIADAE NKAFMASEAV KEAERVARMV EESDSMLQLA KNIYERCTQG EIVLMA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242277.11e-119PREDICTED: telomere repeat-binding factor 4
TrEMBLA0A2G5F8D70.0A0A2G5F8D7_AQUCA; Uncharacterized protein
STRINGAquca_001_00028.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-58MYB_related family protein