PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G084800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 268aa    MW: 29752.9 Da    PI: 7.3435
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G084800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.8e-18176210135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Aqcoe7G084800.1.p 176 CTHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 210
                        *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.9E-823264IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.334170206IPR000679Zinc finger, GATA-type
SMARTSM004017.1E-17170220IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-14173233No hitNo description
Gene3DG3DSA:3.30.50.104.8E-14173207IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.18E-13175222No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15176210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSSERDMYIS PASPELFRID DLLDFSNEDL FSSSTTTTET DLNFPPPETT TSNHFSTATA  60
ETTPNFSHDL CVPSDDVAEL EWLSTFVDDS SSHFPITNFT TNTVSVPGKT RSKRSKAAVT  120
RHSWTSLPES DSPAISKFIP IITTTTTSTK PNKQRESSSS PSSSSSSSLS VRGRKCTHCA  180
SEKTPQWRTG PMGPKTLCNA CGVRYKSGRL VPEYRPAASP TFVLTQHSNS HRKVLELRRQ  240
KEVVMEDNKS NNCHHEFFHN HHDFKVC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258899.13e-96PREDICTED: GATA transcription factor 4-like
SwissprotO497415e-70GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A2G5E3V80.0A0A2G5E3V8_AQUCA; GATA transcription factor
STRINGAquca_013_00753.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-67GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]