PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G042500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HSF | ||||||||
Protein Properties | Length: 243aa MW: 27555.6 Da PI: 4.8389 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 98 | 9.2e-31 | 26 | 105 | 2 | 75 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT......X CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks......k 75 Fl+k+y+++ed++++++isw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ k++s Aqcoe7G042500.1.p 26 FLTKTYQLVEDPTVDDVISWNEEGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWKTAStpmavpL 105 9***************************************************************9999876664444440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-31 | 20 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.0E-36 | 22 | 229 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.3E-27 | 23 | 91 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.6E-26 | 26 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-21 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-21 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.3E-21 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MSPTPPVEQT GESLAGDGQR ILPTPFLTKT YQLVEDPTVD DVISWNEEGS TFIVWRPAEF 60 ARDLLPKYFK HNNFSSFVRQ LNTYGFRKIV PDRWKTASTP MAVPLVHSGS PSNSGEEQKR 120 ESSLTQELSQ MKSLCNNIYA LMTKYANSQQ ENNEFHVEKP LDLMPTKRFQ EETEGEVHVG 180 PSCSSMKIED DGTPRLFGVP IGTKRSRRES EDDQEQQDKT EMVKSEHSDD NHSNHDSGWM 240 IL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-21 | 26 | 90 | 29 | 93 | Heat shock factor protein 1 |
5d5v_B | 2e-21 | 26 | 90 | 29 | 93 | Heat shock factor protein 1 |
5d5v_D | 2e-21 | 26 | 90 | 29 | 93 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010278594.1 | 9e-89 | PREDICTED: heat stress transcription factor B-2b-like | ||||
Swissprot | Q6Z9C8 | 2e-59 | HFB2B_ORYSJ; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A1U8BNE1 | 2e-87 | A0A1U8BNE1_NELNU; heat stress transcription factor B-2b-like | ||||
STRING | XP_010278594.1 | 3e-88 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 2e-60 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G042500.1.p |
Publications ? help Back to Top | |||
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