PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G031000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 690aa MW: 76554.6 Da PI: 6.9604

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G031000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	84	105	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H Aqcoe7G031000.1.p 84 KCEKCSREFCSPINYRRHKRVH 105 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.64	83	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MPVANLNSYN MLDVMRPDQR VGKLEEGNDS LDTFIRQAIG KEPVLSFSRA GDNPVQWIQL 60 LQALDHQDLP GWPLLAPPKV QMQKCEKCSR EFCSPINYRR HKRVHRRALK VDKDFPKNRD 120 LLGAFWDKLS LDDAKEIVSF KNITLEDVPG SSIVKTLTSL IRKPGFFPLP QVYIRAGSAL 180 LDVVQARPSG FPLSSQELFN ILDDASEKTF LCAGTALSLQ KFVFDGEAGK IGLEMKNIVA 240 CTCFLLEQNL VNAWLADKDA EALRCHKLLV EEEEAAQRRQ ADLLERRRLK KLRKESLRVK 300 EQIDTEEADL EENSSDSLPD LTSIEASSPP EASNSDLYTL EEPSDLEPLH PMNFNKEADA 360 SCFSGLDNVQ IDTASSNADL NNFRNVDHRL KHGNMRRNHN VARRPSPSSR RGASNGFHSG 420 VVVPKLGPVQ RQGVHRDQKS TLLNGHKIWT RKTKPDNEGE DLSVGLLGES RDLNDRDSID 480 HSDVDESCEV LIGSISVTLR ECNAQSQGAM LTSVVDQCAA DNQLPQNKCL QKKHAKPDSG 540 QCGVNRSVKL WRPVGKHEAA GALTLKDGEK DTVMDMHVNM ADQASTIEMS PLVEECADPR 600 GLKLFCSSSA EAFLTQRWKE AVAADHVKLV LSSESNSPPN PNILCSSENR LSRVGPLEPS 660 NHGATKLKSK DKSVKNGRTK YIPKQIKST*

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MPVANLNSYN MLDVMRPDQR VGKLEEGNDS LDTFIRQAIG KEPVLSFSRA GDNPVQWIQL  60
LQALDHQDLP GWPLLAPPKV QMQKCEKCSR EFCSPINYRR HKRVHRRALK VDKDFPKNRD  120
LLGAFWDKLS LDDAKEIVSF KNITLEDVPG SSIVKTLTSL IRKPGFFPLP QVYIRAGSAL  180
LDVVQARPSG FPLSSQELFN ILDDASEKTF LCAGTALSLQ KFVFDGEAGK IGLEMKNIVA  240
CTCFLLEQNL VNAWLADKDA EALRCHKLLV EEEEAAQRRQ ADLLERRRLK KLRKESLRVK  300
EQIDTEEADL EENSSDSLPD LTSIEASSPP EASNSDLYTL EEPSDLEPLH PMNFNKEADA  360
SCFSGLDNVQ IDTASSNADL NNFRNVDHRL KHGNMRRNHN VARRPSPSSR RGASNGFHSG  420
VVVPKLGPVQ RQGVHRDQKS TLLNGHKIWT RKTKPDNEGE DLSVGLLGES RDLNDRDSID  480
HSDVDESCEV LIGSISVTLR ECNAQSQGAM LTSVVDQCAA DNQLPQNKCL QKKHAKPDSG  540
QCGVNRSVKL WRPVGKHEAA GALTLKDGEK DTVMDMHVNM ADQASTIEMS PLVEECADPR  600
GLKLFCSSSA EAFLTQRWKE AVAADHVKLV LSSESNSPPN PNILCSSENR LSRVGPLEPS  660
NHGATKLKSK DKSVKNGRTK YIPKQIKST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	291	ERRRLKKL
2	289	299	KKLRKESLRVK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241876.1	0.0	PREDICTED: uncharacterized protein LOC104586368 isoform X2
TrEMBL	A0A2G5E0X3	0.0	A0A2G5E0X3_AQUCA; Uncharacterized protein
STRING	Aquca_013_00290.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-135	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G031000.1.p