PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G019800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 342aa    MW: 37118.9 Da    PI: 8.0394
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G019800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.7e-1382126147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Aqcoe7G019800.1.p  82 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 126
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-1676132IPR009057Homeodomain-like
PROSITE profilePS5129415.81977131IPR017930Myb domain
TIGRFAMsTIGR015572.7E-1880129IPR006447Myb domain, plants
SMARTSM007173.0E-1181129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-681122IPR009057Homeodomain-like
PfamPF002492.9E-1182126IPR001005SANT/Myb domain
CDDcd001672.19E-884127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVSVNPNHPS EGGFYLDHSI TMPALPGLNS IPTTTTTTTT TTTTPTTAIT TVPTATTTTT  60
TTASLDDLSK KTRKPYTITK SRESWTEQEH DKFLEALQLF DRDWKKIEAF VGSKTVIQIR  120
SHAQKYFIKV QKNGTSEHVP PPRPKRKAAH PYPQKAIKNV PMLSQAMGAV QSASAMLEPG  180
YVLGPDSSSI LRNSTTNPAV SSWAHNSLPP VGVSHATKGL LDDVGSAGPA VVNNCCSSTE  240
STPRPCPIRD ATEKGNHHVM PDFAQVYSFI GSVFDPNRSG HLQKLKQMDP IDVETVLLLM  300
RNLSVNLASP DFEDHRRLLS SYDIDSEKAE PVGANNVGEC R*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261345.11e-154PREDICTED: protein REVEILLE 6 isoform X2
RefseqXP_010276889.11e-154PREDICTED: protein REVEILLE 6-like
SwissprotQ8H0W31e-116RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2G5E0610.0A0A2G5E061_AQUCA; Uncharacterized protein
STRINGAquca_013_00181.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-102MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]