PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G244500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 335aa    MW: 38795.2 Da    PI: 4.8339
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G244500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.62.8e-5481371129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeelv +yLkkk++++k++l +vi+++d+y++ePwdL+      ++e++e+yfFs++dkky+tg+r+nrat +g+Wkatg+d
  Aqcoe6G244500.1.p   8 VPPGFRFHPTDEELVGYYLKKKIAAQKIDL-DVIRDIDLYRIEPWDLQDrcgIGYEEQNEYYFFSHKDKKYPTGTRTNRATMAGFWKATGRD 98 
                        69****************************.9***************95344333466799******************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        k+v++ k +l+g++ktLvfykgrap+g+ktdW+mheyrle
  Aqcoe6G244500.1.p  99 KAVYE-KMRLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 137
                        *****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-586157IPR003441NAC domain
PROSITE profilePS5100557.9828157IPR003441NAC domain
PfamPF023655.1E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MESIEPSVPP GFRFHPTDEE LVGYYLKKKI AAQKIDLDVI RDIDLYRIEP WDLQDRCGIG  60
YEEQNEYYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA VYEKMRLIGM RKTLVFYKGR  120
APNGQKTDWI MHEYRLESDE NGPPQEEGWV VCRAFKKKTN SQTRNNESWD SSYFYDEPSS  180
VSSIIDPTQY IPRLPRQNFI CKQELEADNL NFLHSDNFVQ LPHLESPSLP VIKRQSLLSL  240
VSQNIEDEEQ NRECNNMEKV TDWRALDKFV ASQLSHEDRY DGEGVSTFVN SSNNSADMAL  300
ILLQNSSSEE DNKFSGFLNS NYDCDIGICI FDKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-50716219173NAC domain-containing protein 19
3swm_B3e-50716219173NAC domain-containing protein 19
3swm_C3e-50716219173NAC domain-containing protein 19
3swm_D3e-50716219173NAC domain-containing protein 19
3swp_A3e-50716219173NAC domain-containing protein 19
3swp_B3e-50716219173NAC domain-containing protein 19
3swp_C3e-50716219173NAC domain-containing protein 19
3swp_D3e-50716219173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021273713.10.0NAC domain-containing protein 37
RefseqXP_021273714.10.0NAC domain-containing protein 37
SwissprotQ9SL411e-150NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A2G5EN730.0A0A2G5EN73_AQUCA; Uncharacterized protein
STRINGAquca_006_00155.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-153vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]