PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G224800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 802aa MW: 92219.5 Da PI: 7.8949

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G224800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.4	2.4e-23	60	141	1	87
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fYn+YA+++GF+vr+++s ++k ++e +++t++Cs+eg++++++++ r+r+etrtgC a +++++++ ++w+vt+++leHnH Aqcoe6G224800.1.p 60 RFYNDYAEDMGFRVRVKSSWSRKLSKEKYHATLCCSCEGFKKQKDTH-----RSRPETRTGCSAVVRIRRTEFQRWKVTDVVLEHNH 141 5***************************************99888.....9******************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-20	60	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-30	254	347	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.433	541	577	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.1E-5	552	579	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 802 aa Download sequence Send to blast
MEGTSFDTNP RIEGGRNDNG IESDCANIES SGEYSINQGK KDHLPPAVGM EFDSYDDAYR 60 FYNDYAEDMG FRVRVKSSWS RKLSKEKYHA TLCCSCEGFK KQKDTHRSRP ETRTGCSAVV 120 RIRRTEFQRW KVTDVVLEHN HIRIRKSNKN FSIGTKRKTP LDSDVATETT SFLNTGSYEN 180 LTFAGTDVMN FVNHYKRLKV KGGNAQALHD YFCGMQLTSP NFFYLMDFND DGHLGNVFWA 240 DGRSRAAYGQ FCDVVIFDTT YLSHKYEVPL LIFVGVNHHG HSVLLGCGML ADETKESFHW 300 LFKAWLTCML GRPPSLIITD QVKGLQSAVV EVFPRACHRL CSWNIMQEIS EKLKQVHKYK 360 SVVDELNKVV YNSLRVDEFE SAWENVIQQH ELKHHEWFQT LFEDRRHWVP VFLKEISFLG 420 MLTTSLSESR KPFFEGHIHK HTSMKDFLCQ YELALQHKYE EEAKAAFESR NSDVVLKTKC 480 CFEHQLSKVY TREIFLKFQN EVEEMYCCFN TTQTQVDGTV VTYIVKERIG GEGNNKAIRE 540 YEVSYDSTNG YLRCICGWFY FKGYLCRHAL SVLNHNGVEE IPSQYILSRW RKDVKRIFVS 600 DHGSIYVNAN NPLHRYDHLC RRVSQIVEGV ISQEHYEVAI QALEDSLKKV RLVEHVKANV 660 IDHQLDLSEH PNMIGLAQVN GVVQPSQPTL QSFVGKLYRA SRKTFIDQRR KNKESEGTGG 720 SANQRFQPIA PKPPNLENLG HHNSFTMMYT NSRVRPIQPL MGQLPPTLSS LPEQLYFGAL 780 RGSSMSASVS HAKIPDLSEK E*

Sequence ? help Back to Top

Protein Sequence Length: 802 aa Download sequence Send to blast

MEGTSFDTNP RIEGGRNDNG IESDCANIES SGEYSINQGK KDHLPPAVGM EFDSYDDAYR  60
FYNDYAEDMG FRVRVKSSWS RKLSKEKYHA TLCCSCEGFK KQKDTHRSRP ETRTGCSAVV  120
RIRRTEFQRW KVTDVVLEHN HIRIRKSNKN FSIGTKRKTP LDSDVATETT SFLNTGSYEN  180
LTFAGTDVMN FVNHYKRLKV KGGNAQALHD YFCGMQLTSP NFFYLMDFND DGHLGNVFWA  240
DGRSRAAYGQ FCDVVIFDTT YLSHKYEVPL LIFVGVNHHG HSVLLGCGML ADETKESFHW  300
LFKAWLTCML GRPPSLIITD QVKGLQSAVV EVFPRACHRL CSWNIMQEIS EKLKQVHKYK  360
SVVDELNKVV YNSLRVDEFE SAWENVIQQH ELKHHEWFQT LFEDRRHWVP VFLKEISFLG  420
MLTTSLSESR KPFFEGHIHK HTSMKDFLCQ YELALQHKYE EEAKAAFESR NSDVVLKTKC  480
CFEHQLSKVY TREIFLKFQN EVEEMYCCFN TTQTQVDGTV VTYIVKERIG GEGNNKAIRE  540
YEVSYDSTNG YLRCICGWFY FKGYLCRHAL SVLNHNGVEE IPSQYILSRW RKDVKRIFVS  600
DHGSIYVNAN NPLHRYDHLC RRVSQIVEGV ISQEHYEVAI QALEDSLKKV RLVEHVKANV  660
IDHQLDLSEH PNMIGLAQVN GVVQPSQPTL QSFVGKLYRA SRKTFIDQRR KNKESEGTGG  720
SANQRFQPIA PKPPNLENLG HHNSFTMMYT NSRVRPIQPL MGQLPPTLSS LPEQLYFGAL  780
RGSSMSASVS HAKIPDLSEK E*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250207.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_010250208.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_010250209.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_010250211.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_010250212.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_019052439.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2G5ENU4	0.0	A0A2G5ENU4_AQUCA; Uncharacterized protein
STRING	Aquca_006_00235.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Aqcoe6G224800.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]