PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G195700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 273aa    MW: 31072.6 Da    PI: 5.4777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G195700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-1970118355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+G+r+++ +g+W+AeIrdp   gk  r++lg+f taeeAa+a+++ ++k++g
  Aqcoe6G195700.1.p  70 YRGIRQRP-WGKWAAEIRDP---GKGVRVWLGTFNTAEEAARAYDKEARKIRG 118
                        9*******.**********8...545*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-2269127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-3269127IPR001471AP2/ERF domain
PROSITE profilePS5103223.56569126IPR001471AP2/ERF domain
SMARTSM003801.3E-3869132IPR001471AP2/ERF domain
PRINTSPR003676.5E-127081IPR001471AP2/ERF domain
CDDcd000181.97E-3370127No hitNo description
PfamPF008476.8E-1270118IPR001471AP2/ERF domain
PRINTSPR003676.5E-1292108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MCGGAIISDF IHPPKRGGGK RGISASDLWL NPSSFESQFN HFKEKSTPSG GVVGFEKKEK  60
YGKRKRKNLY RGIRQRPWGK WAAEIRDPGK GVRVWLGTFN TAEEAARAYD KEARKIRGKK  120
AKVNFPNEEI ENFPIPNYHN LSHQIVKSVD DSTLFWDFGF DGGHDLKNYE SFTTNNRDSV  180
INDEEKEKKV VVVVEDNEQE ESEVDRLSEE LMAFESYMKF YQIPYLDGSD EVEQQSIGSN  240
YPVHENVVDS TMNLWSFDDV LPPPMNSSAT VM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2270126360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1923686e-44AY192368.1 Lycopersicon esculentum ethylene response factor 2 (ERF2) mRNA, complete cds.
GenBankAY4967046e-44AY496704.1 Lycopersicon esculentum ethylene-binding protein mRNA, complete cds.
GenBankDQ3467406e-44DQ346740.1 Lycopersicon esculentum cultivar LiChun ethylene responsive factor 2 (ERF2) gene, complete cds.
GenBankHG9755216e-44HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026453870.15e-76ethylene-responsive transcription factor ERF071-like isoform X1
TrEMBLA0A2G5EZX30.0A0A2G5EZX3_AQUCA; Uncharacterized protein
STRINGAquca_003_00658.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.15e-37ERF family protein