PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe6G179000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24522.2 Da PI: 4.4904 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.4 | 4.5e-19 | 21 | 70 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49 +ie r+vtf+kRr+g++KKA+ L++LC+a++ +i+fs+ ++++y++ Aqcoe6G179000.1.p 21 KIEKRESRNVTFCKRRQGLFKKASTLCTLCNANIGIIVFSPsaKNNVYTF 70 799999*********************************98335778888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-24 | 12 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.68E-24 | 12 | 89 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.109 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-14 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-20 | 21 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-14 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-14 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MPKISRKKER DMGKRRIAIE KIEKRESRNV TFCKRRQGLF KKASTLCTLC NANIGIIVFS 60 PSAKNNVYTF GNPSVDKLID RFYNNQNNNS LVAVEEESSE NERGLLWWDN IDFSNFDSME 120 KLKRLETDLM DVKQKVQNQL EKLINGSSSS PPPSQEEEEE SECWLWPSNE DTDTLLNNFD 180 FSEQVASVSK EENQEDEELF FDINQYFNYS * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX680224 | 0.0 | JX680224.1 Aquilegia coerulea MADS-box protein AGL63 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5DBK8 | 1e-151 | A0A2G5DBK8_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_024_00131.1 | 1e-151 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-25 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe6G179000.1.p |