PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G157400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 390aa    MW: 44507.3 Da    PI: 9.6493
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G157400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.8e-18191011199
                        HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +++g+l++pk f+ ++ +g+k ++k+ tl++ +sg+sW+v        ++y +t+GW++F+k++ +++gD +vFk++   +f++ v vf++
  Aqcoe6G157400.1.p  19 SAKGNLSIPKAFIMDYlDGEKYQGKKATLRTtKSGKSWSVST------KGYCFTDGWEDFAKEHSVDVGDLLVFKHE--GGFRFEVIVFDA 101
                        56788************8899999******98999*******......5577***********************65..588889999886 PP
2B341.72.1e-13153229376
                        EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                        ++ ++s++   + l +p +f +++  ++++ ++ ++tl+d + g+sWev l+++++ g+  l++GW +Fv+ n+Lke
  Aqcoe6G157400.1.p 153 TIVIQSSHIDWNSLLIPTDFGRRNglDKNSIKPCMITLKDsKMGKSWEVGLRHKGRYGQACLGRGWPRFVDGNKLKE 229
                        5677888889999***********66334447889*****7888*********999999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-206104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-197104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.9159102IPR003340B3 DNA binding domain
CDDcd100171.80E-1611100No hitNo description
SMARTSM010196.3E-1713102IPR003340B3 DNA binding domain
PfamPF023625.2E-1518101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-12148229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-12150229IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.588151260IPR003340B3 DNA binding domain
SMARTSM010193.2E-4151247IPR003340B3 DNA binding domain
PfamPF023626.5E-11152229IPR003340B3 DNA binding domain
CDDcd100171.92E-10166229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAKTTVRPSN PHFFKFIMSA KGNLSIPKAF IMDYLDGEKY QGKKATLRTT KSGKSWSVST  60
KGYCFTDGWE DFAKEHSVDV GDLLVFKHEG GFRFEVIVFD ATMCEREYPK DDQILMKKAR  120
VAEKTEKKFA NEFTSLEGTA GRIERAKDRT CLTIVIQSSH IDWNSLLIPT DFGRRNGLDK  180
NSIKPCMITL KDSKMGKSWE VGLRHKGRYG QACLGRGWPR FVDGNKLKEM PDEISLHGEE  240
LEDSNSEEGG TSEVQMKEKK KYGRNFSVTV RCSMRKVKTH FVDTLPDLEK KNLMNSCFKY  300
FLDVQYDKIH ICTSVVTQIV KSRVSKLKYV IGDSDLTFRP LDITLVLGLK IGDVRSEFLL  360
MNREVVSAFR QKYFGDSKSI KEKHIEAQL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DVJ81e-61A0A2G5DVJ8_AQUCA; Uncharacterized protein
STRINGAquca_014_00276.12e-62(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-29B3 family protein