PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G153100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25436.8 Da    PI: 5.4728
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G153100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.44.4e-29959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+i+n++ rqvtfskRr g+lKKA+ELS+LCdaeva+iifs tgkl+eyss
  Aqcoe6G153100.1.p  9 KKIDNTTARQVTFSKRRRGLLKKAHELSILCDAEVALIIFSATGKLFEYSS 59
                       68***********************************************96 PP
2K-box49.91.4e-1780170898
              K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        ++ + + +  ++++a+L kei +  +++R++ Ge+L +L+++eLqqLe+ Le++l+++ ++K++ ++++i++l  k   l een++Lrk++
  Aqcoe6G153100.1.p  80 DQPSLELQLENNNYARLSKEIAEKSHQLRQMRGEELRELNIEELQQLEKSLETGLSRVLETKSDKIMKEISTLHTKGMLLMEENERLRKQV 170
                        456667788899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.529161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-31384IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002652.61E-39368No hitNo description
PRINTSPR004049.6E-29323IPR002100Transcription factor, MADS-box
PfamPF003194.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.50186176IPR002487Transcription factor, K-box
PfamPF014864.9E-1690170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVREKIQIKK IDNTTARQVT FSKRRRGLLK KAHELSILCD AEVALIIFSA TGKLFEYSSS  60
SMGEILERQS LHSKNLQKLD QPSLELQLEN NNYARLSKEI AEKSHQLRQM RGEELRELNI  120
EELQQLEKSL ETGLSRVLET KSDKIMKEIS TLHTKGMLLM EENERLRKQV VDMSSEQGNV  180
PGDLENNVVF EEGQSSESVT NISNPGGPPP DNDSSDTSLR LGLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21166166MEF2C
5f28_B1e-21166166MEF2C
5f28_C1e-21166166MEF2C
5f28_D1e-21166166MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1733390.0HQ173339.1 Aquilegia formosa AGAMOUS-like 24-like protein 2 (AGL24.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254525.11e-121PREDICTED: MADS-box protein SVP isoform X2
SwissprotQ9FUY61e-107JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLF2WNM81e-148F2WNM8_AQUFO; AGAMOUS-like 24-like protein 2 (Fragment)
STRINGAquca_015_00177.11e-135(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-101MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]