PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe6G111300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 205aa MW: 23764.6 Da PI: 8.741 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 8e-19 | 51 | 103 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++ q++ Le++F ++++ ++++e++A++lgL+ +qV +WFqNrR +++ Aqcoe6G111300.1.p 51 KRKLSAAQVNGLETYFSIDHNLETQRKERIASELGLDPQQVAIWFQNRRVRWR 103 458999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 103.9 | 1.3e-33 | 50 | 141 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+ qv+ LE+ F+ +++Le++rK+++a+eLgl+p+qva+WFqnrR R++ k+lE +y +Lk++++++ e+++Le++v +L+++l++ Aqcoe6G111300.1.p 50 RKRKLSAAQVNGLETYFSIDHNLETQRKERIASELGLDPQQVAIWFQNRRVRWRVKKLEDEYYKLKATHENVIVEKSQLESQVLRLKAQLSD 141 8***************************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.823 | 45 | 105 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.4E-17 | 48 | 109 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.80E-14 | 50 | 106 | No hit | No description |
SuperFamily | SSF46689 | 7.27E-16 | 50 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.6E-16 | 51 | 103 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-18 | 56 | 103 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.0E-5 | 76 | 85 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 80 | 103 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.0E-5 | 85 | 101 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MNQENAHLFF NIQDHTSSLY TYATSAEGET KKKKRQRRKK DKNEGGADAR KRKLSAAQVN 60 GLETYFSIDH NLETQRKERI ASELGLDPQQ VAIWFQNRRV RWRVKKLEDE YYKLKATHEN 120 VIVEKSQLES QVLRLKAQLS DAQNEMTRLV ERSDGVSSNS QSSSFSMDMD PFFLGDFGME 180 GLEKVFYFNN SVNGMEWVNN VYDM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 36 | KKKRQR |
2 | 36 | 41 | RRKKDK |
3 | 37 | 52 | RKKDKNEGGADARKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021679570.1 | 2e-63 | homeobox-leucine zipper protein ATHB-40-like | ||||
TrEMBL | A0A2G5E9U5 | 1e-150 | A0A2G5E9U5_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_010_00425.1 | 1e-151 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 5e-42 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe6G111300.1.p |