PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G101000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 337aa    MW: 38517.8 Da    PI: 10.2025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G101000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.3e-1129923299
                       --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        + +++l+   g  W vkl  +k  + ++++kGW++F ++n ++ gD++vF+l g+s+f  +vk+++k
  Aqcoe6G101000.1.p 29 LPNEVILKIAPGTCWIVKL--EKVENCVFFRKGWQGFLDDNAIEIGDMLVFSLFGKSKF--NVKIYDK 92
                       456799999999*******..999999**************************999999..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-17798IPR015300DNA-binding pseudobarrel domain
CDDcd100173.81E-11991No hitNo description
SMARTSM010190.00411193IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-142695IPR015300DNA-binding pseudobarrel domain
PfamPF023629.4E-102992IPR003340B3 DNA binding domain
PROSITE profilePS5086311.7583293IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-10223291IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-10223289IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-7228283No hitNo description
PROSITE profilePS508636.597229336IPR003340B3 DNA binding domain
SMARTSM010190.27230317IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRKPKNKPS FFKIMFGDFT EKLHFTGGLP NEVILKIAPG TCWIVKLEKV ENCVFFRKGW  60
QGFLDDNAIE IGDMLVFSLF GKSKFNVKIY DKTCCEKEST DRKKEKQGIV NGKCVELKGH  120
KGIQGKQRIV PEKISCESAI AKNRKVMNIN KTKALVVQSH GREHICTRKT RLIRQGDQIK  180
AKPVEKDALL QQAANWNSST LPWRIRQTVT PQQKCAYEAA ILFKSDYPFF IIKLSKSYME  240
RKYLNLPFGF VKAYFPNESK VVEIMDVEGR TWLVNYTRNL KTGLILSGCS KIYIEINPNN  300
LKDENKSSNN IQQCKNVQTA RIAATDQNIF KLEENS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-16B3 family protein