PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe6G100300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | B3 | ||||||||
Protein Properties | Length: 526aa MW: 59678.5 Da PI: 9.4902 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.5 | 2.1e-12 | 9 | 97 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk l + +++ ++lp +++++++g+ +k+ +l++++ r Wev + +k ++ +l++ W F+k+n L+ gD +vF ++g+ ef +v Aqcoe6G100300.1.p 9 FFKLL--IHDFSQE-MCLPTDYIKNFNGDV--PKQFILTSSTRRFWEVFV--KKIDNNLFLSEQWPIFAKDNALEFGDLLVFIYNGNLEF--RV 93 67777..6677776.9*******8886664..4469**************..********************************987666..99 PP EEE- CS B3 95 kvfr 98 k+f Aqcoe6G100300.1.p 94 KIFG 97 9986 PP | |||||||
2 | B3 | 55.4 | 1.1e-17 | 191 | 272 | 15 | 99 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +p++ ++e g++ + ++ l d+ grsW v++ y+ ++gr++lt+GW F+kan+L+++D++ F++++ + +v +fr+ Aqcoe6G100300.1.p 191 KIGIPNEIVKEKGLSVKD--KMLLLDPCGRSWPVTI-YCWSKGRTFLTAGWPAFCKANRLNTNDTCHFQFIDGVDNAIRVEIFRT 272 4679*****999888544..8***************.766777899***********************9988777799999996 PP | |||||||
3 | B3 | 60.1 | 3.9e-19 | 433 | 524 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 ++ p +v+ks lvlp fa++h++ ++ ++l+d++g +W ++ + + +++ l GWk Fv +n+Lke D+++F+l+ ++ + el+ Aqcoe6G100300.1.p 433 AMHPTYVGKSFALVLPSAFAKKHMKHAPR--GVILRDSNGGTWHAQY--KIG-SHHKLNMGWKTFVFDNHLKECDVCIFELVdENlTHYELK 519 67799******************866555..5***************..555.5889***********************885668888888 PP EEEE- CS B3 94 vkvfr 98 v+++r Aqcoe6G100300.1.p 520 VTIIR 524 88887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-16 | 4 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-20 | 4 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.956 | 6 | 99 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.92E-14 | 7 | 96 | No hit | No description |
SMART | SM01019 | 8.2E-11 | 9 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.8E-10 | 9 | 97 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.703 | 177 | 273 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-18 | 179 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-17 | 179 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.71E-14 | 179 | 271 | No hit | No description |
SMART | SM01019 | 1.1E-8 | 180 | 273 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-15 | 191 | 272 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-22 | 422 | 524 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.45E-21 | 425 | 515 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.01E-19 | 428 | 524 | No hit | No description |
PROSITE profile | PS50863 | 12.858 | 430 | 525 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-9 | 430 | 524 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-16 | 432 | 524 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MGRSNVPSFF KLLIHDFSQE MCLPTDYIKN FNGDVPKQFI LTSSTRRFWE VFVKKIDNNL 60 FLSEQWPIFA KDNALEFGDL LVFIYNGNLE FRVKIFGSNA CEKDVELALK NNVESDFYLR 120 EEKEGNDRGI PDKLHSPDIL KCYKRRRTAE AAVTDKVTSL PNSMSIKTER SEVMEVGLSF 180 NATFQPSRKY KIGIPNEIVK EKGLSVKDKM LLLDPCGRSW PVTIYCWSKG RTFLTAGWPA 240 FCKANRLNTN DTCHFQFIDG VDNAIRVEIF RTRTPPPIAK QASAGVKMST AIPREVIEAP 300 TRKRPGEFVD DRVIHNGKQE SLLMTDCSNN DEQTMSTAPN VAVTIPIDDK LHQLKNAGDP 360 LELPSSILYS GVQSNANKTK KSKSVDNFPD RMKQKSRKKQ LDSRTNRLIA TQEKDRIIAA 420 AAFTSKNPFC CVAMHPTYVG KSFALVLPSA FAKKHMKHAP RGVILRDSNG GTWHAQYKIG 480 SHHKLNMGWK TFVFDNHLKE CDVCIFELVD ENLTHYELKV TIIRH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 145 | LKCYKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5E9G3 | 0.0 | A0A2G5E9G3_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_010_00338.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 1e-28 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe6G100300.1.p |