PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe6G100200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | B3 | ||||||||
Protein Properties | Length: 229aa MW: 26065.5 Da PI: 10.4975 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.5 | 3.6e-16 | 14 | 103 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffkv+ ++++ l+lpk + ++ ++ +k+ tl +++g sW v + ++ ++ ++l++GWk F+++ L+ g+fvvF+++g++ f Aqcoe6G100200.1.p 14 FFKVM--VGDFQKK-LSLPKALTLCFK--PKVPKMFTLISPTGSSWMVSV--KRVDKDFFLANGWKTFAEDYALELGEFVVFRYKGDNAF-- 96 56666..4445554.999999984444..346789***************..99999*****************************9999.. PP EEEEE-S CS B3 93 vvkvfrk 99 vkvf k Aqcoe6G100200.1.p 97 SVKVFGK 103 9999876 PP | |||||||
2 | B3 | 48.5 | 1.6e-15 | 145 | 227 | 15 | 98 |
-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l++pk fa+++ ++ ++++tl+ ++g +W++++++ ++ l +GWk Fv n+Lk++D++vF+l++r+ +++v+++r Aqcoe6G100200.1.p 145 TLIIPKLFAKKYlkNNHLGLTRDVTLRVTTGGTWNLRYSVGVHR--R-LIGGWKTFVVGNNLKARDILVFELVDRNPIQMNVSIIR 227 699*********87333347789***************554444..3.556**********************9999999999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.47E-22 | 8 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-21 | 9 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.648 | 11 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.28E-15 | 12 | 101 | No hit | No description |
Pfam | PF02362 | 2.3E-12 | 14 | 103 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-14 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-18 | 124 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.59E-17 | 124 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.31E-15 | 129 | 227 | No hit | No description |
PROSITE profile | PS50863 | 12.576 | 131 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-7 | 131 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-13 | 144 | 227 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MDSMLHHTSN IPNFFKVMVG DFQKKLSLPK ALTLCFKPKV PKMFTLISPT GSSWMVSVKR 60 VDKDFFLANG WKTFAEDYAL ELGEFVVFRY KGDNAFSVKV FGKNACEKEV PSTNKNIEEV 120 ANHVTSKYPM FTTTVPKGDL TWYTTLIIPK LFAKKYLKNN HLGLTRDVTL RVTTGGTWNL 180 RYSVGVHRRL IGGWKTFVVG NNLKARDILV FELVDRNPIQ MNVSIIRF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5E9G3 | 1e-157 | A0A2G5E9G3_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_010_00338.1 | 1e-158 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 2e-16 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe6G100200.1.p |