PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G054700.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bZIP

Protein Properties

Length: 363aa MW: 41181.7 Da PI: 7.3029

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G054700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	7.8e-11	78	111	5	38
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 k+ rr+++NReAAr+sR+RKka++++Le+ +L Aqcoe6G054700.2.p 78 KVLRRLAQNREAARKSRLRKKAYVQQLETSRLKL 111 789*************************865555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.4E-8	68	120	No hit	No description
SMART	SM00338	1.0E-7	74	137	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.783	76	118	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.58E-7	78	118	No hit	No description
Pfam	PF00170	7.1E-8	78	112	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-29	164	239	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MSSPSTQFAT ARRMGIYDPI HQVSMWGESF KADTSPNTGV SSLVEMDPKY DNKSEDTSHG 60 SLEHSQKYDQ EESKPVEKVL RRLAQNREAA RKSRLRKKAY VQQLETSRLK LTQIEQELDR 120 ARQQGMYISG ALDTNHLGVS GTVNPGVAAF EMEHGHWVEE QNRQIRELRA AWQSHIADVE 180 LRILVENGMN HYYKLFRMKE ICAKADVFYL MSGMWRTSSE RFFLWLGGFR PSELLKVLRP 240 QLDTLTEQQT FEVCTLQHSS RQAEDALSQG MDQLQLTLAE TLAADPFAAG GYMSQMATAM 300 GKLEALVLFV NQADNLREQA LQQMSRILTT RQAARGLLAL GDYFQRLRAL SQLWAARPCE 360 PA*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MSSPSTQFAT ARRMGIYDPI HQVSMWGESF KADTSPNTGV SSLVEMDPKY DNKSEDTSHG  60
SLEHSQKYDQ EESKPVEKVL RRLAQNREAA RKSRLRKKAY VQQLETSRLK LTQIEQELDR  120
ARQQGMYISG ALDTNHLGVS GTVNPGVAAF EMEHGHWVEE QNRQIRELRA AWQSHIADVE  180
LRILVENGMN HYYKLFRMKE ICAKADVFYL MSGMWRTSSE RFFLWLGGFR PSELLKVLRP  240
QLDTLTEQQT FEVCTLQHSS RQAEDALSQG MDQLQLTLAE TLAADPFAAG GYMSQMATAM  300
GKLEALVLFV NQADNLREQA LQQMSRILTT RQAARGLLAL GDYFQRLRAL SQLWAARPCE  360
PA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00586	DAP	Transfer from AT5G65210	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010261147.1	0.0	PREDICTED: transcription factor TGA1-like isoform X2
Swissprot	Q39237	1e-171	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2G5DWS5	0.0	A0A2G5DWS5_AQUCA; Uncharacterized protein
STRING	Aquca_014_00518.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-166	bZIP family protein

Link Out ? help Back to Top
Phytozome	Aqcoe6G054700.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]