PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe6G046800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | NF-YC | ||||||||
Protein Properties | Length: 150aa MW: 17004.5 Da PI: 10.1016 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 46.6 | 7.3e-15 | 12 | 102 | 8 | 97 |
NF-YC 8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 ++ ++++++ + ++P+ r+kki+k d+d++++++ea l+ + elf+ l+ +s a e+kr+ +k + a +r + + dfl+d p Aqcoe6G046800.1.p 12 NNNDNEENLLQPSFPVGRVKKIMKLDKDINKVTSEALFLINLSTELFLQFLSEKSSKIAIEKKRKIIKIDHLRIAAKRHQpTSDFLLDSLP 102 456788899999********************************************************999998887764389*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.37E-17 | 23 | 105 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-17 | 24 | 86 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-18 | 25 | 102 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MAEEEQNNEN TNNNDNEENL LQPSFPVGRV KKIMKLDKDI NKVTSEALFL INLSTELFLQ 60 FLSEKSSKIA IEKKRKIIKI DHLRIAAKRH QPTSDFLLDS LPIPSESVNR PSKDGNQSAP 120 IEKPLSVGTR RIDDIFKKSH KVPLLKHHS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006438038.1 | 9e-53 | nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | A0A2G5DWH2 | 2e-93 | A0A2G5DWH2_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_014_00448.1 | 3e-94 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 3e-38 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe6G046800.1.p |