PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G043200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 328aa    MW: 35861.5 Da    PI: 6.6358
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G043200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55e-21118167255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Aqcoe6G043200.1.p 118 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAESAARAYDEAALRFRG 167
                        8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-33117176IPR001471AP2/ERF domain
PfamPF008471.1E-14118167IPR001471AP2/ERF domain
SMARTSM003803.6E-38118181IPR001471AP2/ERF domain
CDDcd000181.24E-35118177No hitNo description
PROSITE profilePS5103225.541118175IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23118176IPR016177DNA-binding domain
PRINTSPR003676.1E-12119130IPR001471AP2/ERF domain
PRINTSPR003676.1E-12141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MANTIYHDEE DEDEQGIRMM IPGYSRKREM SAMVSALTQV VSGGHKKDRK NNNVSSSGGG  60
GCGGLKNTYI GFGGDLQGES SSINIASEQS RPTATAATTT SAAPTIPNEE AGGARTRKYR  120
GVRQRPWGKW AAEIRDPHKA ARVWLGTFDT AESAARAYDE AALRFRGNRA KLNFPENVQL  180
QPSLPISPPT QISISDLQQT HFPVSSNPSL FYQPQPLQQQ QQQQQLQISD VNVMRDYMEY  240
YQLLGSYRDL QTQHTNSLEP IFFPSSSSLS SSMSSSSSHI PLFPSISVNQ QTGYLLPPGN  300
LDQSDLGTQF PANSWSDFGH YPSSSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-24117178163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-24114178166ATERF1
3gcc_A1e-24114178166ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1716352e-50KC171635.1 Tamarix hispida ethylene response factor 9 (ERF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022132518.13e-50ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2G5DCD13e-56A0A2G5DCD1_AQUCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-30ethylene response factor 110