PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G018100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 515aa    MW: 57171.5 Da    PI: 5.9519
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G018100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3473.1e-1061155031374
               GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetsekn.........sseela 79 
                        lv+lL+++Aea++  +++  la+ +L rl+el+sp+  ++m+Rlaayft AL+  l + sv++  +  ++s+ +  +         +++++a
  Aqcoe6G018100.1.p 115 LVHLLMAAAEALTGANKSrdLARVILVRLKELVSPTTgTNMERLAAYFTDALQGLLEGaSVHSKHQNHNSSNGP--HltndhhghhQADVFA 204
                        68**********997776669***********998766****************99983332222222222221..0234566888999999 PP

               GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLak 167
                        a++l++++sP++kf+h+taNqaIleav +e+r+Hi+D+di++G+QW++++qaL sR++gpp  +lRiT++ +  +   s  +++etg+rL  
  Aqcoe6G018100.1.p 205 AFQLLQDMSPYVKFGHFTANQAILEAVTHERRIHIVDYDIMEGIQWASFMQALVSRKDGPPspHLRITAITRVGNArkSIGSVQETGRRLVA 296
                        99*******************************************************776555********9777777999*********** PP

               GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfl 258
                        fA+++g pf+f+    +  e+++++ L++ +gEal++n++l+  +   +s ++     ++L+  k l+P+vv++ve+ +   +++ F+ rf+
  Aqcoe6G018100.1.p 297 FAASIGQPFSFHQCRLDPDETFRPSVLKLVKGEALVINCMLHFPHYNYRSPDSVA---SFLSGTKALNPRVVTLVEEKVGPiGEAGFVGRFM 385
                        *************9999************************88777755555555...8*******************9988********** PP

               GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe..tlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                        ++l++ysa++dslea++p +s+ r+ vE+++lg++i   +a   ++r e++e    ++Wre+++ aGF pv +s ++ +qaklll  ++ dg
  Aqcoe6G018100.1.p 386 DTLHHYSAVYDSLEAGFPMQSRSRALVEKVFLGPRIAGSLARIYRARGEKNEeeGCSSWREWMNGAGFDPVGISFSNHCQAKLLLGLFN-DG 476
                        *********************************************998876511678********************************.** PP

               GRAS 349 yrveee.sgslvlgWkdrpLvsvSaWr 374
                        yrvee  +++lvlgWk+r+L+s+S W+
  Aqcoe6G018100.1.p 477 YRVEELrKNTLVLGWKSRRLLSASIWT 503
                        ****86489999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.32189483IPR005202Transcription factor GRAS
PfamPF035141.1E-103115503IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MDIAIEDIIT QLEFSGCSTT TTTEDDGTCA WNDWGPIVDW DALSGDHHDD FLGLIESMLV  60
VDDHHHHTMM IDSPDMSNST STTTSADTPP FTIIEEEQEE DTRIIEHDDS KGLRLVHLLM  120
AAAEALTGAN KSRDLARVIL VRLKELVSPT TGTNMERLAA YFTDALQGLL EGASVHSKHQ  180
NHNSSNGPHL TNDHHGHHQA DVFAAFQLLQ DMSPYVKFGH FTANQAILEA VTHERRIHIV  240
DYDIMEGIQW ASFMQALVSR KDGPPSPHLR ITAITRVGNA RKSIGSVQET GRRLVAFAAS  300
IGQPFSFHQC RLDPDETFRP SVLKLVKGEA LVINCMLHFP HYNYRSPDSV ASFLSGTKAL  360
NPRVVTLVEE KVGPIGEAGF VGRFMDTLHH YSAVYDSLEA GFPMQSRSRA LVEKVFLGPR  420
IAGSLARIYR ARGEKNEEEG CSSWREWMNG AGFDPVGISF SNHCQAKLLL GLFNDGYRVE  480
ELRKNTLVLG WKSRRLLSAS IWTVPSPLDS DFMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-56985033378Protein SCARECROW
5b3h_D2e-56985033378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306621.20.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2G5DV050.0A0A2G5DV05_AQUCA; Uncharacterized protein
STRINGAquca_014_00175.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-167GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]