PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G015800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

TCP

Protein Properties

Length: 487aa MW: 52777.1 Da PI: 6.976

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G015800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.5	4.1e-37	120	267	2	112
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLl q++ ai+++tgt++ +a+++ + s + ++ +ss + Aqcoe6G015800.1.p 120 TTTKRSSKDRHTKVDGRGRRIRMPAVCAARVFQLTKELGHKSDGETIEWLLHQSESAIIAATGTGTVPANFStLNTSLRREHTTSSLStlet 211 5789************************************************************9999988864445554444444446667 PP TCP 89 ................................kaaksaakskksqksaasalnlak 112 +++++++ + + ++++s+ l+ Aqcoe6G015800.1.p 212 lpssktvsnpfpfahindqgipqttmlgfhphQQQQQHHLHYSMIHPNQSMETLSS 267 77777777777777777777665555555553333333344444444444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-35	125	252	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.661	126	180	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MSQIDRNVVE LKNSLVVLNN SKMKPTKSEQ QQQHQPQHQK SSPSLNLATF QNQSGPSPSQ 60 NTTSLSPGFF MSSISGGGGD GGVPSSSSMD MASIITDGSQ QQLTIATTST TTTAITTTTT 120 TTKRSSKDRH TKVDGRGRRI RMPAVCAARV FQLTKELGHK SDGETIEWLL HQSESAIIAA 180 TGTGTVPANF STLNTSLRRE HTTSSLSTLE TLPSSKTVSN PFPFAHINDQ GIPQTTMLGF 240 HPHQQQQQHH LHYSMIHPNQ SMETLSSEQH DGGSGGGREM NGNYLGKRFR EDLFREESKP 300 QLENSESNLS ATNKSPRTSI QLNIHDHEQA NVGATATVAA PIAAIRPHSN MMWAMAPASN 360 SGSGAFWMLP FTTGSTSTPS MAAAGSDPLM WGSYPSAGGH HQYTRLMQQP LQLSSEQQHL 420 GLGTSETNLG MLAAMETYNR SGFNMNLDQH HQHQPLDHNQ QQDEVHSHHS EANDDDSGEK 480 SPSKSH*

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MSQIDRNVVE LKNSLVVLNN SKMKPTKSEQ QQQHQPQHQK SSPSLNLATF QNQSGPSPSQ  60
NTTSLSPGFF MSSISGGGGD GGVPSSSSMD MASIITDGSQ QQLTIATTST TTTAITTTTT  120
TTKRSSKDRH TKVDGRGRRI RMPAVCAARV FQLTKELGHK SDGETIEWLL HQSESAIIAA  180
TGTGTVPANF STLNTSLRRE HTTSSLSTLE TLPSSKTVSN PFPFAHINDQ GIPQTTMLGF  240
HPHQQQQQHH LHYSMIHPNQ SMETLSSEQH DGGSGGGREM NGNYLGKRFR EDLFREESKP  300
QLENSESNLS ATNKSPRTSI QLNIHDHEQA NVGATATVAA PIAAIRPHSN MMWAMAPASN  360
SGSGAFWMLP FTTGSTSTPS MAAAGSDPLM WGSYPSAGGH HQYTRLMQQP LQLSSEQQHL  420
GLGTSETNLG MLAAMETYNR SGFNMNLDQH HQHQPLDHNQ QQDEVHSHHS EANDDDSGEK  480
SPSKSH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256467.1	1e-76	PREDICTED: transcription factor TCP8
Refseq	XP_010256468.1	1e-76	PREDICTED: transcription factor TCP8
Refseq	XP_010256469.1	1e-76	PREDICTED: transcription factor TCP8
TrEMBL	A0A2G5DUU7	0.0	A0A2G5DUU7_AQUCA; Uncharacterized protein
STRING	Aquca_014_00153.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	5e-39	TCP family protein

Link Out ? help Back to Top
Phytozome	Aqcoe6G015800.1.p