PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G469700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | bHLH | ||||||||
Protein Properties | Length: 474aa MW: 52870.7 Da PI: 7.1398 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.1 | 2.8e-12 | 299 | 345 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L Aqcoe5G469700.1.p 299 MNHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLGDAVSYINEL 345 689************************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.1E-50 | 25 | 202 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 6.15E-18 | 293 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.326 | 296 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.52E-13 | 299 | 349 | No hit | No description |
Pfam | PF00010 | 9.0E-10 | 300 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 300 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-15 | 302 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005509 | Molecular Function | calcium ion binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MMVSSSYTSP SSTFSSPGQE ALSTLQKRLH FFVQSRPEQW AYAIFWRKGE EENGGVVLAW 60 GDGHFKGNQE FDVVCKQPTQ DKLGLGLERK RSLQGLLCDS NFWADDESME DVTDLEWFYM 120 VSMTRSFAIG EDLPGKAYGT GNSAWLNSTQ KLQQYSERTK EAQMHGIQTF VCIPTSSGVV 180 ELGSSDIIKE NWGLTQQAKS LFGSEVAGLV SKQPSPGGLL PFLDRNLSFA DIGITTGVHK 240 HVQQEHEAET RKEVAKTGLS SSLDSEHSNS DGPFVALALE KRKPKKRGRR PGNGRDAPMN 300 HVEAERQRRE KLNHRFYALR AVVPNVSRMD KASLLGDAVS YINELKAKID NLEAQVHKYS 360 KKIKIEKLNS KDHHQHGMVD DHYPRSDSES AGLLKMEVEV RIHGPDAMIR VQCQNMNHPS 420 AKLMDALRDL DLQVQHASVA SVKDLMLQDI VARVPEGLRT EESLKAALIS RLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 6e-28 | 24 | 202 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 6e-28 | 24 | 202 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 6e-28 | 24 | 202 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 6e-28 | 24 | 202 | 8 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 281 | 289 | RKPKKRGRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00547 | DAP | Transfer from AT5G46830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018805267.1 | 1e-174 | PREDICTED: transcription factor MYC2 | ||||
TrEMBL | A0A2G5CUA9 | 0.0 | A0A2G5CUA9_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_037_00261.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46830.1 | 7e-74 | NACL-inducible gene 1 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G469700.1.p |