PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G444900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 370aa    MW: 41907.3 Da    PI: 5.2632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G444900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20131181155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+GVr+++ +g+W+AeIrdp     r  r +lg+f+taeeAa+ +++a+ kl+g
  Aqcoe5G444900.1.p 131 KKYRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTFDTAEEAARVYDNAAIKLRG 181
                        59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.99E-35131188No hitNo description
SMARTSM003801.3E-39132195IPR001471AP2/ERF domain
PROSITE profilePS5103224.684132189IPR001471AP2/ERF domain
PfamPF008472.0E-13132181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-30132189IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-22132189IPR016177DNA-binding domain
PRINTSPR003672.9E-11133144IPR001471AP2/ERF domain
PRINTSPR003672.9E-11155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDTCFLSPKI KYTEHKNVIK KVVKHQPPST RRSHHPNIDS SSSSSTILGP KVVRFSVTDN  60
NATDSSSDEE DHTFLSRCRV KRYINEINVE PCSSSVIQES NGGLKIRSKK VLAENKTINN  120
NKRSRVGDGK KKYRGVRQRP WGKWAAEIRD PARRVRLWLG TFDTAEEAAR VYDNAAIKLR  180
GPDALINFGS QQEEQQEEVK KEEKVRVKKE KTSIKPEINL TTSVSGYDSS EESHNISSPT  240
SVLRYRSSSS SSSNKQEVVV EEEEAKPQNT KTPKDSEEFQ DETNCLSNHF GDEFLPLDTP  300
FLNDIFDFRA PLDDLFGDFS IPNNNLMRDD FGDFGDFPCY NEDFKSSSLG VEDYFEEIDD  360
FFASDSLVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22131188159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2539650.0AC253965.1 Aquilegia coerulea clone COL05-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5CT910.0A0A2G5CT91_AQUCA; Uncharacterized protein
STRINGAquca_037_00045.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-55cytokinin response factor 4