PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G432100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 706aa    MW: 78614.5 Da    PI: 9.7714
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G432100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-091567448
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                       W t+E++llv av+++G ++W+++a +++          +t+  ck ++q+++
  Aqcoe5G432100.1.p 15 WGTWEELLLVSAVNKHGIKNWDSVAMEIQnkitspqhFILTPHVCKQKYQQLR 67
                       *****************************888888773358888999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.16E-51066IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-41466IPR009057Homeodomain-like
PfamPF002498.5E-81566IPR001005SANT/Myb domain
CDDcd001678.28E-61566No hitNo description
SMARTSM002972.8E-11322431IPR001487Bromodomain
SuperFamilySSF473703.53E-15330431IPR001487Bromodomain
Gene3DG3DSA:1.20.920.108.5E-13331427IPR001487Bromodomain
CDDcd043691.04E-11333426No hitNo description
PfamPF004395.9E-10335416IPR001487Bromodomain
PROSITE profilePS5001412.637341412IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MAEAEETRRN IDEIWGTWEE LLLVSAVNKH GIKNWDSVAM EIQNKITSPQ HFILTPHVCK  60
QKYQQLRQRF NENQDNTTNT NIDNTIPWLD ELRKLRVAEL RREVQQYDVS IVSLQLKVKR  120
LTEERERSSK DNQVQPSDLD RTVPEKTISG EDSDRDNQSF NESNSTDLKS ENQVTAGVDE  180
SDKTQPNKIV AVAGAGAGDL DPVTAEEDKR VVAVVVVEEG SWNGSSETIN IAKDSVVSQT  240
LQKSSEPIIK NREAGDSAEL WESVESKGEG EGEDAEEEEE GTKENSDVQS SASLSMKNRR  300
KTDVVVSVSS SGDGEGDDIS PAIKRISIKS QPLAKFLEMI KSHKYGYVFE RRLESQETSK  360
YMSVIRQHLD LEIVNKRLQE GQYSGCSRKF FRDLLVLLNN AIVYFPNNSV EFTAATELRQ  420
IVSKEMGLRI QKVDQSPETQ ELAPPIIPPP ALPKLDLEPS DSLLMKQKSS VPMIACRKRS  480
SIIYKAAPER KVEKKEAVVE DKKPAFDRKK QDSLVTLAEE KNVIKKEKRD RPASGTRSSR  540
TVSKSSNRNP SPSSNQASSS KGGTAAEDNS ETKAEKEKNN NSTVSKKRSV ANFLNRMKKN  600
TSSNGTLLDS LKNSGNSSNN SKGGNAEQKK SSGGRGDVRK EQATRQSVSR RQTRDQSSPA  660
KRSVGRPPKR NASSPITPPV SSKRSRETTE TEAAASRQPR KRSRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265891.10.0PREDICTED: uncharacterized protein LOC104603529
TrEMBLA0A2G5CSE40.0A0A2G5CSE4_AQUCA; Uncharacterized protein
STRINGAquca_038_00063.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-75DNA-binding bromodomain-containing protein