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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Aqcoe5G410800.2.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 291aa MW: 33110.2 Da PI: 6.0102 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 71.8 | 1.5e-22 | 54 | 146 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
+fY+ YA++ GFs+r++++++ +r ++ fvC++eg++++ k+ + k rrt++ r gCka+++v++ + + w+vt ++ +HnHe+
Aqcoe5G410800.2.p 54 SFYDIYAQSKGFSIRTRSTYRDRRGPDLSSALFVCTCEGFNQRMPKSddEGKIRRTTSIVRSGCKASMRVTNIRgTTAWKVTVFSDQHNHEF 145
59***************************************99888765778899******************99****************8 PP
FAR1 90 a 90
Aqcoe5G410800.2.p 146 I 146
6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 9.3E-20 | 54 | 146 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 291 aa Download sequence Send to blast |
MAEEMDIYGG MFEIENIGEV EKDEVADDNI PVELNEINEP GVGMIFSSFH EAKSFYDIYA 60 QSKGFSIRTR STYRDRRGPD LSSALFVCTC EGFNQRMPKS DDEGKIRRTT SIVRSGCKAS 120 MRVTNIRGTT AWKVTVFSDQ HNHEFIPQNK GDLVKCNKRK SRAAKTPTEA MRSCDVYRQA 180 TRLAHMAGRS EEIYEVIMAV MEETFKKVSQ MEKELFNPEN DKRCLDNGYD NSNNLGNSDQ 240 LIPAEPHISR TNLKKRDRKG KEMENNINIL DTGLTKWQPL NHEEDISVVS * |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A2G5CWD9 | 0.0 | A0A2G5CWD9_AQUCA; Uncharacterized protein | ||||
| STRING | Aquca_035_00151.1 | 0.0 | (Aquilegia coerulea) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G10240.1 | 3e-16 | FAR1-related sequence 11 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Aqcoe5G410800.2.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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