PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G370600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HRT-like | ||||||||
Protein Properties | Length: 449aa MW: 50012.7 Da PI: 9.9736 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 50.2 | 4.2e-16 | 255 | 284 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG+ l+dGsvC ++P++gRKRC eHKG+R Aqcoe5G370600.1.p 255 VCGLFLGDGSVCINKPIEGRKRCGEHKGKR 284 7****************************9 PP | |||||||
2 | HRT-like | 54.3 | 2.3e-17 | 368 | 398 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv l+d svCk++P+ gRKRCeeHKGmR+ Aqcoe5G370600.1.p 368 VCGVVLNDQSVCKNSPAVGRKRCEEHKGMRV 398 7*****************************7 PP | |||||||
3 | HRT-like | 49.2 | 8.9e-16 | 413 | 442 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CGv+l+dG +C+r Pv gRKRC HKG+R Aqcoe5G370600.1.p 413 VCGVALGDGDFCMRVPVYGRKRCGIHKGRR 442 7****************************9 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MGFSSLELSR LKREECKRTK HDSVFSQWEI LIGPFDWENH SLGKNGIERY RIHNIPISCS 60 CPGLYELGVA AVQTDLGRDI RKLSLDSVVV VYLGQADNVR TRLQHYGRAG SHLDHGKFFG 120 EPSDDHYNLK GPGLFSEIFS RGFPIVFRWA SMENKKLAEK TEGRLLSIFD YAWNKGGNGA 180 RRPNDIYLNL DKIVSSNISS PSIPRKLHNW LKTNLLHRKK KGIKIETNSP PFERVKLKPR 240 LLTVKQDFNE EYPSVCGLFL GDGSVCINKP IEGRKRCGEH KGKRNIGSSS RSKTPRKLLV 300 SSLPLKAEPV CISSMPLKAE PVCISSMPLK AEPVCTKVSM PGGKSCELYE EKWAGSPQNL 360 LHEELNNVCG VVLNDQSVCK NSPAVGRKRC EEHKGMRVNK ALSKSTTEGN FGVCGVALGD 420 GDFCMRVPVY GRKRCGIHKG RRAVATHI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026447495.1 | 1e-142 | protein EFFECTOR OF TRANSCRIPTION 2-like | ||||
TrEMBL | A0A2G5E6E8 | 0.0 | A0A2G5E6E8_AQUCA; Uncharacterized protein (Fragment) | ||||
STRING | Aquca_011_00262.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 3e-76 | effector of transcription2 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G370600.1.p |